Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 167 4e-36 >seq9 Length=3473953 Score = 167 bits (184), Expect = 4e-36 Identities = 364/540 (67%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | ||| |||||| || |||||||||||||| | | ||| || Sbjct 1908487 CTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTT 1908546 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | | | ||| |||| || ||||| | || Sbjct 1908547 CTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAG 1908606 Query 159748 CAACCTGTCTGCCACAAATTCGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC 159805 | | || || || || || ||||| ||| || | | ||| |||| || || || Sbjct 1908607 GAGACGATCAGCGACGAACTCAATGTATTGCTTCA--TGAGGTCAGAGTTCATGCCGAGG 1908664 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 || | ||| || ||||| | |||||||||| |||||| ||| || || || | Sbjct 1908665 AGGGCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATG 1908724 Query 159866 ATCTGCGAGA-CACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCA 159924 || | | || || | | | | ||| | || || ||| |||||||| Sbjct 1908725 ATATCCTGGATCATCTGCTTGCT--GGCACGACCCT--TGAGGTGAGAGTGGAGGAGGCA 1908780 Query 159925 CGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCC 159984 |||||||| ||| || |||||||| |||||||||| ||||||||| | | || || Sbjct 1908781 GGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACC 1908840 Query 159985 CGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGAT 160044 ||||||| |||||| |||||||| || |||| || || ||||| || || ||||| Sbjct 1908841 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGAT 1908900 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT 160104 ||||| || || ||||| || ||||| | || |||| |||| | | || ||| | Sbjct 1908901 ACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGCCCTTATCCTGGAT 1908960 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 ||| | ||||||| |||||||||||| |||||| || ||| ||| | |||||| || Sbjct 1908961 CCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAA 1909020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150945919680