Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 226 4e-54 seq4 98.7 1e-15 >seq1 Length=6191809 Score = 226 bits (250), Expect = 4e-54 Identities = 433/633 (68%), Gaps = 14/633 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 2105362 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 2105303 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || || || ||| Sbjct 2105302 TCCTCAATGGTGAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATCAGGACG 2105243 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || |||||||| |||||||| || || || || || || || || Sbjct 2105242 TTACGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 2105183 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || |||||| ||| || || || || | ||||| || || ||||| || Sbjct 2105182 TTGATGATTCGAAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGC 2105123 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| || || Sbjct 2105122 TGAGAATCGTTGAAGTAGGCAGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCAAGG 2105063 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | || Sbjct 2105062 TAAGACTCAGCGGTCTCGCGCATCTTGGTGAGGATCATAGCAGAGATCTCCTC-GGGGCT 2105004 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC--- 7872 | || || || || || || || || || || || ||||| || || |||| Sbjct 2105003 GAAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTT 2104950 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | || | ||| | | ||| ||||||||| | || |||| || | ||||| Sbjct 2104949 GTCGACGATCTTGAAGGGGAAATGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTT 2104890 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | ||||| || || || || ||||| | |||||||| || |||||| Sbjct 2104889 GCGACCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGAGGGTTCATAGCGACTTGGTT 2104830 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || || || ||||| || | || || || ||||| | || ||||| Sbjct 2104829 CTTGGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGT 2104773 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 ||||| || || |||||||| || || || || Sbjct 2104772 AGTTCGGTTACCCTGGTCGTTGGCGATGATATC 2104740 >seq4 Length=4774899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| ||||||||||| Sbjct 3053735 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCAAAGATACC 3053794 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 3053795 GTCATCAATGGAGAGAAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 3053851 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 3053852 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 3053910 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 3053911 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 3053970 Query 7695 GTTG 7698 | || Sbjct 3053971 GCTG 3053974 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 3054033 CGTTGAAGTAGGCAGGGACGGTAACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 3054092 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| || | | |||||| | Sbjct 3054093 CAGCGACCTCCTTCATCTTGCCAAGAACCATGGCAGAGATCTCCTCGGGAGTAAACTGCT 3054152 Query 7824 TC 7825 || Sbjct 3054153 TC 3054154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129402039520