Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 seq5 107 2e-18 seq1 89.7 6e-13 >seq6 Length=4141359 Score = 170 bits (188), Expect = 2e-37 Identities = 527/805 (65%), Gaps = 23/805 (3%) Strand=Plus/Plus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| |||| | ||| ||||| ||||| |||| |||||| | ||| || | Sbjct 1574235 GGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGAT 1574294 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 |||||| || || | |||||| || ||| ||| | |||||| || || ||| Sbjct 1574295 AATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCG 1574354 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||||| ||||||||| ||||| | || || || ||||| | || ||||| Sbjct 1574355 GTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAAT 1574414 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTA 110516 ||| | ||| | | || | | | | | || |||| | | || |||| |||| | Sbjct 1574415 GGCGTACCAAAGCTTCTGAGCCTTG-ATTGTCTTGCG--ACCCTTGCCCTCCTTCTCGAA 1574471 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 ||| ||||| |||| ||||||| ||| || || | || || || || Sbjct 1574472 CTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTT 1574531 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 ||| || | || | ||| | || || ||||| | ||||||||| || ||||| || Sbjct 1574532 GGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 1574591 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | || |||||| |||||| ||| |||| || | ||| ||||| || || Sbjct 1574592 CCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAG 1574651 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-------TGG 110749 || | || || | || ||| |||||||| || ||||| |||| || | ||| Sbjct 1574652 ATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGG 1574711 Query 110750 ATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCA 110809 || ||| | |||| |||| ||||| || || ||| |||||||| | |||| Sbjct 1574712 -TCGCTTGTTGCCACCC---TGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCA 1574767 Query 110810 TAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAA 110869 |||||| || |||| ||| ||| || ||||| || || | | ||||||| Sbjct 1574768 TAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAA 1574827 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTG 110928 | ||| | || | ||| |||||||| ||| ||| || ||||| ||| || Sbjct 1574828 TACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TG 1574886 Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 || ||| | || || || ||||| || |||| | ||| | |||||||| ||| Sbjct 1574887 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAC 1574946 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | || || |||| || || ||||||||||| || || | ||||| ||| ||| || Sbjct 1574947 AATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGA--AGAACT 1575004 Query 111049 TG--GGACATCTTGTTGTATGTGTC 111071 || |||||| |||||||| || Sbjct 1575005 TGCTAGACATCAGATTGTATGTCTC 1575029 >seq5 Length=4758267 Score = 107 bits (118), Expect = 2e-18 Identities = 251/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 2810542 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 2810484 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || ||||||||||| || ||||| | Sbjct 2810483 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAAGA 2810424 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| || ||| | Sbjct 2810423 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGACGGTCCGA 2810364 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 2810363 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 2810306 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || ||||| || || | |||||||| |||||||| | ||||| | | Sbjct 2810305 CTCGCCGGCTGTGGCTTTGGCAAGCAATGTCTTACCAGTACCAGGGGGGCCAGCTAAGAT 2810246 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 2810245 AGCACCTCGAGGGATCTTGGCACCCAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 2810189 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 2810188 GCTCACAAACTCC 2810176 >seq1 Length=6191809 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 3493653 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 3493594 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 3493593 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 3493534 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 3493533 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 3493482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972848978400