Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 seq9 116 4e-21 seq1 98.7 1e-15 >seq6 Length=4141359 Score = 185 bits (204), Expect = 1e-41 Identities = 539/813 (66%), Gaps = 29/813 (4%) Strand=Plus/Plus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | |||||| || || | |||||| || || || || | ||||||||||| Sbjct 1574286 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1574345 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||| |||||| |||||||||||||||||| | || | || ||||| ||||| | Sbjct 1574346 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1574405 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CCCTC 106683 || ||||| || | ||| | | || | | || | | || | | | || | ||||| Sbjct 1574406 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTGCCCTC 1574462 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTG 106742 | |||| ||||| ||| || || || || ||||| ||| || ||||| ||| || | Sbjct 1574463 CTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTCGGCGAGGCCAG 1574521 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || || || || | || | ||| | ||| || ||||| ||||||||||||| Sbjct 1574522 GGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAA 1574581 Query 106803 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 106860 | || || ||||| |||| | | ||| ||||| | ||| || |||| || | ||| || Sbjct 1574582 GATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTCCTCCTTACCATG 1574639 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||| || | |||||||| || | || ||| | |||||| ||||| || |||| || Sbjct 1574640 GTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 1574699 Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 | || || | | ||| ||| | || | ||||| || || ||| ||| || Sbjct 1574700 AAAAGCACC---TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAA 1574756 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGAT 107032 || |||||||| |||| || ||||| ||| ||| || || || ||| || ||| Sbjct 1574757 GACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAG-- 1574814 Query 107033 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 107092 | | || | | | || | | | || ||||| |||||| ||| ||||| Sbjct 1574815 CCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATG 1574874 Query 107093 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 107152 ||||| | | ||||| | ||||| || | || ||| ||||| | | | | | Sbjct 1574875 GCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAG 1574934 Query 107153 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 |||||| |||| || || || || || ||||||||||| || || | || || Sbjct 1574935 AAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGC 1574994 Query 107213 ATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 107270 ||| | | |||| |||||| | ||||||||||||||| || || || || | Sbjct 1574995 GTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCAC 1575052 Query 107271 CGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | ||| || | | ||||||||| | ||||| Sbjct 1575053 CCCAGATACCAACAGACACACGCATGATCATGT 1575085 >seq9 Length=3473953 Score = 116 bits (128), Expect = 4e-21 Identities = 331/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| ||||||||||||||||||||||| ||| ||||| ||||| ||||| Sbjct 1908494 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1908553 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | || || | | | | || |||| |||| Sbjct 1908554 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1908608 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 ||||||| | || |||||||||| | ||| ||||||||||| |||| ||| Sbjct 1908609 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 1908668 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||| || || || || || ||| | | |||||| || || || | | ||| Sbjct 1908669 CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1908728 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 1908729 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 1908785 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| |||||||| || || || || || || || ||||| || || |||| Sbjct 1908786 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 1908845 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| | || | | ||| | || |||||||||||||| Sbjct 1908846 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 1908905 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCAT 117456 | ||| ||||| |||| || |||| ||| |||||| ||| | || | | | |||| Sbjct 1908906 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGCCCTTATCCTGGATCCAT 1908964 Query 117457 TTCATTGCCCATTTCGCCTTCTT 117479 || ||||| | |||||||| Sbjct 1908965 CGGATGGCCCAGTCAGCCTTCTT 1908987 >seq1 Length=6191809 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGA 9420 ||| | |||||||| || || ||||| ||||| || || ||| |||| || | | Sbjct 4957782 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCCGCAGT 4957723 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||||| || || || | ||||| || ||||||||||| ||||| |||| | | Sbjct 4957722 G----AAGAGGTCACGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 4957668 Query 9481 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 4957667 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 4957608 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTT 9599 |||||||| ||||| || ||| | |||||| ||||| || | || || ||| Sbjct 4957607 GTCTTACCAGTACCAGGAGGACCGACTAGGAGGACACCCTTAGGCAGTTTAGCACCAAGA 4957548 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 9659 | | | | || || | ||| ||||| || |||| |||| | || |||||||| Sbjct 4957547 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 4957488 Query 9660 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 9691 ||||| || | ||||||| | ||||| || Sbjct 4957487 TCGTCACAACCATGAACATCGTTGAACCGAGT 4957456 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 3493653 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 3493594 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 3493593 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 3493534 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 3493533 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 3493481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977643602720