Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 208 1e-48 seq6 201 2e-46 >seq9 Length=3473953 Score = 208 bits (230), Expect = 1e-48 Identities = 562/857 (66%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || ||||||||||| Sbjct 1909335 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1909276 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || ||| | || |||||| ||| || Sbjct 1909275 TCCAAGGATCTCCACGACTGGAACAACCGC-CTAACTGCTGATGAGCAGTTCTTTGTCTC 1909217 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || |||| | Sbjct 1909216 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 1909157 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | || || ||| | ||||| || |||||||| |||||||| || Sbjct 1909156 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1909097 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | || || ||| || || || || || || ||||| | || Sbjct 1909096 GGAGAACATTCATTCCGAGACCTACTCC---CTCCTCATCGACACATACATCAAGGAGCC 1909040 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 1909039 CGCCCAGCGAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 1908980 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | || || | | |||| | |||| || || || Sbjct 1908979 TGACTGGGCCATCCGATGGATCCAGGATAAGGGCTCCTCCTTTGCCCAGCGTCTCGTTGC 1908920 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||||||||| ||||| ||||| ||||| ||| | || || |||||||||||||||| Sbjct 1908919 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 1908860 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || |||||| || ||| ||||| ||||||||||||||| | ||||||| Sbjct 1908859 GAAGCGTGGTCTCATGCCTGGTCTG-ACTTTCTCCAACGAGCTCATCTCTCGTGACGAGG 1908801 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC-- 26066 |||| |||| || ||||||||||| ||| || | ||| ||| | | | | Sbjct 1908800 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTC---TCAC---CTCAAGGGTCGTGCCA 1908747 Query 26067 TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| ||| || | |||||||| || || || || ||| ||||||||| Sbjct 1908746 GCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCA 1908687 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATT 26184 | ||||||||| | || ||||||| ||||||||| Sbjct 1908686 CCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAAC-TCTGACCTCATGAAGCAATACATT 1908628 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 |||| || || || | ||| || | || || || | |||||| | | Sbjct 1908627 GAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACC 1908568 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || ||||||||||||||||| ||| Sbjct 1908567 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAG 1908508 Query 26305 AGGGTCGGCGACTATCA 26321 | || | |||||| || Sbjct 1908507 CGTGTTGCCGACTACCA 1908491 >seq6 Length=4141359 Score = 201 bits (222), Expect = 2e-46 Identities = 718/1103 (65%), Gaps = 47/1103 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || ||||||||||| || |||||||| |||||| ||||||||| ||| | |||||||| Sbjct 1573966 GTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 1574024 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||||||||| | | ||||| | ||||| || || || || || | | Sbjct 1574025 TGACTCGAAGGGCATACGCAG-AGCAAGGAAAG-CATCGGCAAGGCCTTGAACACCAAGA 1574082 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || || | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 1574083 CCAATAGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 1574140 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | |||||||| | Sbjct 1574141 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGA 1574200 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | ||| | | ||| || || | || | | || | | Sbjct 1574201 AGTCGTAG--CAAG-CTTCATCGTAGTTGATG---------AAGGAGGGCAGAGACAGAG 1574248 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||| ||||| || || || |||||||| |||| || || || || || | Sbjct 1574249 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAA 1574308 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || |||||| || |||| || || || |||||| ||| || |||| Sbjct 1574309 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 1574368 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || || || ||||| ||| ||| | ||||| || ||| || | Sbjct 1574369 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCT 1574428 Query 221892 CTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 1574429 -TCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTAC------ 1574481 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | | || | || || || ||| | ||||| || ||| | ||| ||| Sbjct 1574482 -AGAGCCT--CGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCAC 1574538 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 ||||| |||||| ||| | || || | || |||||| || || |||||||| || Sbjct 1574539 ATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGG 1574598 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || ||||| | || || ||||||| || | ||| || | ||||| | Sbjct 1574599 GCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGG 1574658 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 || || || | |||| |||||| ||||| || |||| ||| | ||| || ||||||||| Sbjct 1574659 AAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTG 1574718 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||||||||| || | ||| | ||| | |||||||| ||||| | || || | Sbjct 1574719 TTGCCACCCTGGTCGA-CATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 1574777 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-G 222302 || || ||| ||||||||| || ||||| | || || | | ||| | | Sbjct 1574778 ACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC---GAATACGGTG 1574834 Query 222303 CAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 || | | ||||||||||| || || ||||||||||| ||| |||||||||| || Sbjct 1574835 CACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 1574894 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || | Sbjct 1574895 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGG 1574954 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | || | ||| || || || ||||| || || || ||| | |||||||| Sbjct 1574955 CTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACAT 1575014 Query 222481 CAGATCGTACGTCTCTACGACTC 222503 ||||| ||| ||||| | ||||| Sbjct 1575015 CAGATTGTATGTCTCCAAGACTC 1575037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839830680320