Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 6e-15 seq8 93.3 3e-13 >seq1 Length=6191809 Score = 98.7 bits (108), Expect = 6e-15 Identities = 322/491 (66%), Gaps = 12/491 (2%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| ||||| |||| || || |||| || ||| || || Sbjct 2104740 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 2104799 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| ||||| ||||| || || | |||| || || ||| || ||| Sbjct 2104800 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCTCAGAACACT 2104859 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || || ||||||| ||||| || || | ||| | || || | ||| Sbjct 2104860 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGGCCGAT 2104919 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| |||| || || ||| | | | ||||| || || || || | | Sbjct 2104920 ATGAAGCATTTCCCCTTCAAGATCGTCGACAAGGGTGGCAAGCCCATCATCGAGGTCGAG 2104979 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | || | || || || || | |||| || || | || ||| | ||| | | | Sbjct 2104980 TTCAAG--GGCGAGACCAAG--ACCTTCAGCCCCGAGGAGATCTCTGCTATGATCCTCAC 2105035 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATT 474745 ||| ||| | ||||| ||| || || ||||| | ||| || | | || || || Sbjct 2105036 CAAGATGCGCGAGACCGCTGAG-TCTTACCTTGG-CGAGACTGTCAACAACGCTGTTGTT 2105093 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || |||||||| |||||||| || || ||||| || || Sbjct 2105094 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 2105153 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||| ||| | || || || || || || || || ||||| |||| || ||| Sbjct 2105154 GCCGGTCTTAACGTTCTTCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 2105213 Query 474866 CTTGATAAGAA 474876 ||||||||||| Sbjct 2105214 CTTGATAAGAA 2105224 >seq8 Length=4055048 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||||||||| || || || || || ||||||| ||||| Sbjct 2978603 ACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGT 2978544 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||| || || ||||| | ||||| || || || || || || Sbjct 2978543 GCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCC 2978484 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||| |||||||| || | | | || || | Sbjct 2978483 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAA-CCTCGA 2978425 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || ||||| | ||||| ||||| || || Sbjct 2978424 GGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTG 2978385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268160841003344