Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 168 8e-37 seq9 116 4e-21 seq1 91.5 2e-13 >seq6 Length=4141359 Score = 168 bits (186), Expect = 8e-37 Identities = 543/820 (66%), Gaps = 27/820 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || ||| || || || || || || Sbjct 1575093 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 1575034 Query 75271 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| | |||||| |||| | | ||| || || | || || ||| Sbjct 1575033 CTTGGAGACATACAATCTGATGTCTAGCAAGTTCT--TCACGCATGCTTCCCCCACTCTC 1574976 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||||||| || || || || || |||| ||||||| | | | | ||||| Sbjct 1574975 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1574916 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1574915 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1574856 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 75506 || ||||| || | | | || | | | || | | ||| || ||| || | Sbjct 1574855 GGTGGTATCGGTCTAAATGTGCACCGTATTCGTGCTACTGG--CTCATACATCGCCGGTA 1574798 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| ||| ||||| || |||| |||||||| || || ||| ||| || || | Sbjct 1574797 CCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGT 1574738 Query 75567 ATGTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGG 75622 |||| | || | | ||| | || | ||| | | || ||||| | || || ||| Sbjct 1574737 ATGTCGACCAGG-GTGGCAACAAGCGACCAGGTGCTTTTGCCATCTACCTCGAGCCTTGG 1574679 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| || | || |||||||| | || ||||| ||| | || |||| || | Sbjct 1574678 CACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGG-TCCG 1574620 Query 75683 TGTA-GAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 || | ||||| ||| | | |||| ||||| || || |||||||||||||| ||||| Sbjct 1574619 TGCCCGTGATCT-TTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAA 1574561 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTG 75799 || ||| | ||| | || | || || || || || || ||| ||||| || || Sbjct 1574560 AGAACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTATG 1574501 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 | ||||| || || || || ||| ||||| || ||||||| | | ||| | Sbjct 1574500 GA-GAGGAATTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGCAA---G 1574445 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | || | ||||| | || ||||| | | ||||| ||||| |||| Sbjct 1574444 ACAAT-CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAA 1574386 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 |||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || Sbjct 1574385 CCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTAC 1574326 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||| ||||| || |||||||| |||||| | |||||| Sbjct 1574325 CATCCGAAGCTCCAACCTTTGCACTGAAATTATCGAGTAC 1574286 >seq9 Length=3473953 Score = 116 bits (128), Expect = 4e-21 Identities = 331/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| |||||| ||| |||| Sbjct 1908987 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGGCTC-CTCCTTTGCCCAGCG 1908929 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| ||||| ||| ||||||||||||||| || | ||| | | || | Sbjct 1908928 TCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTT 1908869 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || ||||| || || || || || || Sbjct 1908868 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCG 1908809 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 || |||||||| ||| || |||||| || ||| || | || | || | | Sbjct 1908808 TGACGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 1908752 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || |||||| | | ||| Sbjct 1908751 TGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTT 1908692 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 || || || || || ||| ||| |||| ||||||||||| ||| | || Sbjct 1908691 TCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAATA 1908632 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA-----TTTGG 65433 |||||||| || | ||||||||||| |||| || | | | | Sbjct 1908631 CATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGG-----CAACGAGAAGGTCTAC 1908577 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || || | || || || ||||| ||||| ||||| ||||| ||| |||||||||||| Sbjct 1908576 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTC 1908517 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| |||| ||||| Sbjct 1908516 TTTGAGAAGCGTGTTGCCGACTA 1908494 >seq1 Length=6191809 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27858 GCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC 27917 |||||| || |||||||| || ||||| || |||| ||| ||||||||||| || Sbjct 3493481 GCGCTCTAGAACAAGTTGAGCAATGCGGTCGCCTTCCTTCACCTCAAAGTCGGATTCGTT 3493540 Query 27918 GTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACC 27977 || |||||||| | ||| ||||||| ||| || |||| ||| || ||||| || || Sbjct 3493541 ATGGTTGAAGAGCAGGACCTTGACTTGACCACGGTAATCGGCATCGATGACACCAGCGCC 3493600 Query 27978 AACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCAT 28030 | ||| |||||| ||| ||||| ||||| || |||| || |||| Sbjct 3493601 TGTGTCAATGAAATGCTTGGAAGCCAGACCTGATCGAGGGGCAATGCGTCCAT 3493653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566408352640