Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 187 7e-42 seq9 163 8e-35 seq7 111 5e-19 seq1 107 6e-18 >seq6 Length=4141359 Score = 187 bits (206), Expect = 7e-42 Identities = 577/881 (65%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||| ||||| || || |||||| || | ||||| ||||| Sbjct 1574286 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1574345 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 1574346 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1574405 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || ||| |||| |||| ||| Sbjct 1574406 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTT 1574465 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| | |||| || | ||| | | | ||||| || || || || || |||||| Sbjct 1574466 CTCGAACTTTTCGTACAGAGCCTC--GAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGG 1574523 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||| | ||| | || || | | |||||| ||| || Sbjct 1574524 CACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 1574580 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||||| ||| |||||| || | || |||||| | || || Sbjct 1574581 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGG 1574640 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || | ||||| || ||||| || || || ||| Sbjct 1574641 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1574700 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| |||||||| || |||||||||||||| || ||||||||| Sbjct 1574701 AAAGCACCTGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACA 1574760 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| || |||||| || || || ||||| ||| || | || |||| Sbjct 1574761 CGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 1574820 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | |||| | || | || ||| || |||||||| | |||| || || || || || Sbjct 1574821 GCACGAATACGGTGCACATTTAGACCGATACCACCAG-CCATCTTGGAGATCATGGCACA 1574879 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279 ||| | ||||| | | || || |||||| || || | ||| | | ||| ||| Sbjct 1574880 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 1574938 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || ||||| || | || || || || ||||| || || || | ||||| | | Sbjct 1574939 AAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGA 1574998 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398 | |||| ||||||| || |||||||||| | ||| | || | |||| | Sbjct 1574999 AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAG- 1575057 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 |||| | ||| || | ||| ||| |||||||| ||||| | |||| || ||||| Sbjct 1575058 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATC 1575117 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 1575118 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1575158 >seq9 Length=3473953 Score = 163 bits (180), Expect = 8e-35 Identities = 249/352 (71%), Gaps = 2/352 (1%) Strand=Plus/Minus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || || ||| ||| || || | ||||| |||||| || || ||||| || || Sbjct 1909131 GAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCATTCCGAGACCTAC 1909072 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCC 133426 || || || || || |||||||| || ||| |||| | | || ||||||||| Sbjct 1909071 TCCCTCCTCATCGACACATACATCAAGGAGCCCGCCCAGCGAACCTATCTCTTCAACGCC 1909012 Query 133427 ATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485 ||| | || |||| || || |||||| |||||||||| || |||||||||||| Sbjct 1909011 ATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGA 1908953 Query 133486 CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttttt 133545 ||| | | ||||| ||||||||||| ||||||| || ||||| || || || Sbjct 1908952 TAAGGGCTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTT 1908893 Query 133546 CAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTG 133605 ||||||||| ||| ||| || || ||||| || ||||||||| | | ||||| ||| Sbjct 1908892 CAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAC 1908833 Query 133606 TTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||| || ||||| || || || | ||||||| |||||||| || |||||| Sbjct 1908832 TTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 1908781 >seq7 Length=4400171 Score = 111 bits (122), Expect = 5e-19 Identities = 392/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| || ||||| | | ||||||| || | ||| | || || Sbjct 3958631 ATGAGTCCACAAATCTCACAGACGTGGACACGGAAAGCATCTGACACCTCAAACAGACGC 3958572 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| ||||| || ||||| Sbjct 3958571 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 3958512 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | | Sbjct 3958511 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 3958454 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 3958453 GACCACGAGCCCGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 3958398 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| ||| | || || | || || | |||||| || | || || Sbjct 3958397 TAGGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCATTGTA 3958342 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| |||||| | ||| ||| |||| | || Sbjct 3958341 CATGACCTCGAAACCTCGAGATTGATAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 3958287 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || || |||| || | | ||| | | Sbjct 3958286 GAATC--GACTGTGACATCAGTGAACGGTGTAGCGTCACCCTCCATACCTTCCAGCGTTG 3958229 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 3958228 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGACGGAATGGCGT 3958169 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | || ||||||||||| ||||| | || || || |||| |||||||||| | | Sbjct 3958168 GAGGGTTGATGATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 3958110 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 3958109 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 3958051 >seq1 Length=6191809 Score = 107 bits (118), Expect = 6e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || |||||||||||||| ||| | || || || || Sbjct 1968922 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGCA 1968863 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| | |||||| |||| || |||||||| | || | || || || Sbjct 1968862 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTC-GCTGGGAGTGAG 1968804 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 1968803 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 1968744 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || | || | | || | || | || |||||||| || || || | || Sbjct 1968743 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 1968684 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 ||| || | || | |||| || |||||||| || || | ||||||||| || Sbjct 1968683 CTGACCGACAAGCGCAGTCATTTGAGAAATATTGATAGATGA--GCCCTTGGAACC 1968630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809528920236