Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 158 2e-32 seq6 118 2e-20 seq5 114 2e-19 >seq9 Length=3473953 Score = 158 bits (174), Expect = 2e-32 Identities = 237/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | |||||| |||| |||| || |||||||| || ||| Sbjct 1908799 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA--CCAGGCATGAGACCACGC 1908856 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||||||| ||| || ||| ||||| ||||| || || ||| Sbjct 1908857 TTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 1908916 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | ||||| |||| |||||| | | ||||| | | |||||| || ||| Sbjct 1908917 AAGGCAACGAGACGCTGGGCAAAGGAGGA---GCCCTTATCCTGGATCCATCGGATGGCC 1908973 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576 || || ||||| || | | |||| | || || |||||| ||||| | ||| | Sbjct 1908974 CAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCG- 1909032 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | || ||||||| ||| |||||||||||||| ||||||||||| || || ||||| Sbjct 1909033 CTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGTT 1909092 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 1909093 CTCCATCATGATCTGGAAGCCGTAGAAGCA 1909122 Score = 120 bits (132), Expect = 5e-21 Identities = 184/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| ||| || |||||||||||||| | || Sbjct 1908478 GACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAG 1908537 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 1908538 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 1908597 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||| || || || |||||||| |||||||| || ||||||| | | |||| Sbjct 1908598 AGCGA--CAAGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTC 1908655 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| |||||| | ||| || |||||| Sbjct 1908656 ATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCA 1908715 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 1908716 TCAGTGATGATAT-CCTGG 1908733 >seq6 Length=4141359 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || |||| || || || Sbjct 1574727 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 1574786 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 1574787 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1574846 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 1574847 GATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1574906 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 1574907 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1574966 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||| ||||| Sbjct 1574967 GGCATTGAAGAGAGTGGG 1574984 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| ||| Sbjct 2367144 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 2367203 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 2367204 GATGAGACGGACAGAGGTCTGGATCTCTCGGG 2367235 >seq5 Length=4758267 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || ||||||||||| ||||| | | Sbjct 2544616 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAGACCGTTGCCAATATGA 2544675 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| |||||||| |||||||| || || ||||| | | ||| Sbjct 2544676 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATTACGAACG 2544726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916200871687892