Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 185 1e-40 seq6 105 1e-16 >seq9 Length=3473953 Score = 185 bits (204), Expect = 1e-40 Identities = 276/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || || Sbjct 1909215 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 1909157 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | |||||||| | || ||||| |||| || ||||| ||||||||| || Sbjct 1909156 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1909097 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| || || || |||||||| ||||| |||||||| ||| ||||||| || | Sbjct 1909096 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGC 1909037 Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | || | ||| | ||||| |||||| || || | || | | | || ||||| | Sbjct 1909036 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 1908978 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||||| || |||||| | | ||||| || | ||||||| |||| ||||| | Sbjct 1908977 ACTGGGCCATCCGATGGATCCAGGATAAGGGC-TCCTC-CTTTGCCCAGCGTCTCGTTGC 1908920 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 |||||| || || ||||| ||||| ||| || ||| | ||||||| |||||||| Sbjct 1908919 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 1908860 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| || |||||||| ||||| Sbjct 1908859 GAAGCGTGGTCTCATGCCTGGTCT 1908836 >seq6 Length=4141359 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| ||||||||||| || | || || || || ||||| || | || Sbjct 1574984 CCCACTCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1574925 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 1574924 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1574865 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || |||||| | | ||| | || || | ||| | ||| | Sbjct 1574864 AAGATGGCTGGTGGTATCGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 1574805 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || || || |||| || |||||||| || || ||| |||| Sbjct 1574804 GCCGGTACCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1574745 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 1574744 GCTCGGTATGTCGACCAG 1574727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177769918613336