Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 156 6e-33 seq9 109 8e-19 >seq6 Length=4141359 Score = 156 bits (172), Expect = 6e-33 Identities = 553/854 (65%), Gaps = 20/854 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | || || ||||| ||| ||||| |||||||| || || || Sbjct 1574322 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1574381 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| |||| | || | ||| | | ||||| | ||| || || Sbjct 1574382 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 1574441 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 | |||||| || ||| ||| || || | | | ||| | |||| |||||||| Sbjct 1574442 T---GTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCC--TCGAATTCC 1574496 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||||| | || | | ||||| || || || || ||||||| || ||| || | Sbjct 1574497 TCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCG 1574556 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| || ||||| || ||||| || |||||||| || | || ||||| | | Sbjct 1574557 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGG 1574616 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATCA 69702 | | || || || || || || ||| ||||| || || || | | |||| Sbjct 1574617 GCACGGACCTCCTCCTTACC---ATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCA 1574673 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 || ||||| || || || || || || | | || ||||| || || || ||||| || Sbjct 1574674 GAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCCACCCTGGTCG 1574733 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | || | |||||||| || |||| | ||||| |||| || |||||| ||| |||| Sbjct 1574734 ACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCG 1574793 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || || || | || || || | || |||||| | | |||||| || || Sbjct 1574794 TTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCGATACCA 1574853 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 || ||||| || ||||| | ||||| || | || || || || ||||| || || Sbjct 1574854 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTG 1574913 Query 69943 TCATCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 || || |||| | || ||||| || | |||| ||| | || || || ||||| Sbjct 1574914 TCGTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATT 1574972 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | || || || || || ||||| | || ||| | |||||||||||| || | Sbjct 1574973 GAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAA 1575032 Query 70062 AGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAG 70120 || || ||||| ||| | || || | | |||||||| | ||| ||||||| Sbjct 1575033 GACTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAG 1575091 Query 70121 GTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACC 70180 | || || | | ||| | || || | ||||||||| |||| ||| || || | Sbjct 1575092 GGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGC 1575151 Query 70181 CAAAATAGTTGTAT 70194 |||| || | |||| Sbjct 1575152 CAAAGTATTGGTAT 1575165 >seq9 Length=3473953 Score = 109 bits (120), Expect = 8e-19 Identities = 362/559 (65%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || ||||| || | | || | ||||| || || || || Sbjct 1908778 GCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAG 1908837 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||||||||| |||||||| || |||| || || | ||| ||||| Sbjct 1908838 ACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAA 1908897 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TG 39792 ||| || || || || ||||| ||||| || | || | | | | ||| || Sbjct 1908898 GATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGCCCTTATCCTG 1908957 Query 39793 TATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | || ||||| ||||| ||||| | || || || || || || || | Sbjct 1908958 GATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 1909016 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||||| | | | || || | ||||| || || | || || Sbjct 1909017 TGAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGG 1909076 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| ||||| || ||| ||||| || ||||| || || | || |||| | Sbjct 1909077 TCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGA 1909136 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| || |||| || | | || || || || || |||||| || | Sbjct 1909137 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAG 1909196 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCC 40088 | || || || | | || | ||| | | ||||| | || | || |||| Sbjct 1909197 CGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCC 1909256 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | || ||| || || | ||| | || ||||| ||||| || || ||||| |||| Sbjct 1909257 AGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 1909316 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 1909317 TCTTGTACATTTGCCAAAT 1909335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905125037920