Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 181 1e-40 seq9 116 5e-21 seq1 91.5 2e-13 >seq6 Length=4141359 Score = 181 bits (200), Expect = 1e-40 Identities = 543/821 (66%), Gaps = 29/821 (4%) Strand=Plus/Plus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | |||||| || || | |||||| || || || || | ||||||||||| Sbjct 1574286 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1574345 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| |||||| |||||||||||||||||| | || | || ||||| ||||| | Sbjct 1574346 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1574405 Query 111400 TTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CCCTC 111456 | ||||| || | ||||| | || | | || | | || | | | || | ||||| Sbjct 1574406 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTGCCCTC 1574462 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTG 111515 | |||| ||||| ||| || || || || ||||| ||| || ||||| ||| || | Sbjct 1574463 CTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTCGGCGAGGCCAG 1574521 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || || || || | || | ||| | ||| | ||||| ||||||||||||| Sbjct 1574522 GGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAA 1574581 Query 111576 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 111633 | || || ||||| |||| | | ||| ||||| | ||| || |||| || | ||| || Sbjct 1574582 GATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTCCTCCTTACCATG 1574639 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| || | |||||||| || | || ||| | |||||| ||||| || |||| || Sbjct 1574640 GTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 1574699 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 | || || | | ||| ||| | || | ||||| || || ||| ||| || Sbjct 1574700 AAAAGCACC---TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAA 1574756 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGAT 111805 || |||||||| |||| || ||||| ||| ||| || || || ||| || ||| Sbjct 1574757 GACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAG-- 1574814 Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | | || | | | || | | | || ||||| |||||| ||| ||||| Sbjct 1574815 CCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATG 1574874 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 ||||| | | ||||| | ||||| || | || ||| ||||| | | | | | Sbjct 1574875 GCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAG 1574934 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 |||||| |||| || || || || || ||||||||||| || || | || || Sbjct 1574935 AAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGC 1574994 Query 111986 ATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 112043 ||| | | |||| |||||| | ||||||||||||||| || || || || | Sbjct 1574995 GTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCAC 1575052 Query 112044 CGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | ||| || | | || ||||||| ||||| ||| ||| Sbjct 1575053 CCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1575093 >seq9 Length=3473953 Score = 116 bits (128), Expect = 5e-21 Identities = 331/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || ||||||||||||||||||||||| ||| ||||| ||||| ||||| Sbjct 1908494 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1908553 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 1908554 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1908608 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||| | ||| ||||||||||| |||| |||| Sbjct 1908609 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 1908668 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || ||| | | |||||| || || || | | ||| Sbjct 1908669 CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1908728 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 1908729 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 1908785 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || ||||| ||||| |||| Sbjct 1908786 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 1908845 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | || | | ||| | || |||||||||||||| Sbjct 1908846 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 1908905 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| ||||| |||| || || | ||| |||||| ||| ||| | | | |||| Sbjct 1908906 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGCCCTTATCCTGGATCCAT 1908964 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 1908965 CGGATGGCCCAGTCAGCCTTCTT 1908987 >seq1 Length=6191809 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 3493653 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 3493594 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 3493593 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 3493534 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 3493533 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 3493481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028640028800