Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02]
428 sequences; 43,948,611 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq6 181 1e-40
seq9 116 5e-21
seq1 91.5 2e-13
>seq6
Length=4141359
Score = 181 bits (200), Expect = 1e-40
Identities = 543/821 (66%), Gaps = 29/821 (4%)
Strand=Plus/Plus
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339
|||||| | |||||| || || | |||||| || || || || | |||||||||||
Sbjct 1574286 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1574345
Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399
||||| |||||| |||||||||||||||||| | || | || ||||| ||||| |
Sbjct 1574346 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1574405
Query 111400 TTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CCCTC 111456
| ||||| || | ||||| | || | | || | | || | | | || | |||||
Sbjct 1574406 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTGCCCTC 1574462
Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTG 111515
| |||| ||||| ||| || || || || ||||| ||| || ||||| ||| || |
Sbjct 1574463 CTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTCGGCGAGGCCAG 1574521
Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575
| || || || || | || | ||| | ||| | ||||| |||||||||||||
Sbjct 1574522 GGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAA 1574581
Query 111576 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 111633
| || || ||||| |||| | | ||| ||||| | ||| || |||| || | ||| ||
Sbjct 1574582 GATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTCCTCCTTACCATG 1574639
Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693
||| || | |||||||| || | || ||| | |||||| ||||| || |||| ||
Sbjct 1574640 GTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 1574699
Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747
| || || | | ||| ||| | || | ||||| || || ||| ||| ||
Sbjct 1574700 AAAAGCACC---TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAA 1574756
Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGAT 111805
|| |||||||| |||| || ||||| ||| ||| || || || ||| || |||
Sbjct 1574757 GACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAG-- 1574814
Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865
| | || | | | || | | | || ||||| |||||| ||| |||||
Sbjct 1574815 CCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATG 1574874
Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925
||||| | | ||||| | ||||| || | || ||| ||||| | | | | |
Sbjct 1574875 GCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAG 1574934
Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985
|||||| |||| || || || || || ||||||||||| || || | || ||
Sbjct 1574935 AAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGC 1574994
Query 111986 ATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 112043
||| | | |||| |||||| | ||||||||||||||| || || || || |
Sbjct 1574995 GTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCAC 1575052
Query 112044 CGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084
| ||| || | | || ||||||| ||||| ||| |||
Sbjct 1575053 CCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1575093
>seq9
Length=3473953
Score = 116 bits (128), Expect = 5e-21
Identities = 331/503 (66%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || ||||||||||||||||||||||| ||| ||||| ||||| |||||
Sbjct 1908494 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1908553
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485
||||| || || || | || || | | | | || |||| ||||
Sbjct 1908554 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1908608
Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545
||||||| | || |||||||||| | ||| ||||||||||| |||| ||||
Sbjct 1908609 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 1908668
Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605
||| || || || || || ||| | | |||||| || || || | | |||
Sbjct 1908669 CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1908728
Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662
| ||||| | | | ||| | | || | || | || ||| || |||||
Sbjct 1908729 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 1908785
Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722
| || ||| |||||||| || || || || || || || ||||| ||||| ||||
Sbjct 1908786 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 1908845
Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782
||||||| |||||||| | ||| | || | | ||| | || ||||||||||||||
Sbjct 1908846 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 1908905
Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841
| ||| ||||| |||| || || | ||| |||||| ||| ||| | | | ||||
Sbjct 1908906 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGCCCTTATCCTGGATCCAT 1908964
Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864
|| ||||| | ||||||||
Sbjct 1908965 CGGATGGCCCAGTCAGCCTTCTT 1908987
>seq1
Length=6191809
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664
|||| || |||| || ||||| ||||| ||| |||||| ||| | || || |
Sbjct 3493653 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 3493594
Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724
|||| || ||| |||| || ||| ||||||| ||| | |||||||| || ||
Sbjct 3493593 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 3493534
Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777
||||||||||| ||| |||| || ||||| || |||||||| || ||||||
Sbjct 3493533 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 3493481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028640028800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |