Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-32 seq6 140 4e-28 seq4 82.4 9e-11 >seq9 Length=3473953 Score = 154 bits (170), Expect = 2e-32 Identities = 310/454 (68%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| || | | | ||| |||||||| Sbjct 1908494 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1908553 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 1908554 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 1908612 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||| | ||| || |||||||| |||| |||| ||| Sbjct 1908613 ATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 1908672 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || ||| ||| ||||||| || || || | ||| | || Sbjct 1908673 GGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTG 1908732 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 1908733 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 1908789 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 1908790 AGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 1908849 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 1908850 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 1908909 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 | || || |||| |||||||| ||||||||| Sbjct 1908910 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 1908943 >seq6 Length=4141359 Score = 140 bits (154), Expect = 4e-28 Identities = 827/1306 (63%), Gaps = 47/1306 (4%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| ||||||||||||||||| | || || || || |||| || || || || Sbjct 1573875 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 1573934 Query 118403 GCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 ||||| ||| |||| | ||||| || |||||| |||||||| || || || Sbjct 1573935 ACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCTC 1573991 Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AA 118518 || || | || | | |||||| || || || | | || || | || Sbjct 1573992 GAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAA 1574050 Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 || |||| || || ||||| ||||| || ||||| || || || | ||| ||| | Sbjct 1574051 GGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGT 1574110 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | ||||| || || || || ||| |||||| | | | || || || | | Sbjct 1574111 TGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAA 1574170 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-ACA 118697 |||||| ||| | || ||||| | | | || | || || |||||| | | Sbjct 1574171 CAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAGT 1574224 Query 118698 TACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 118752 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 1574225 TGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCAC 1574284 Query 118753 TGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 |||||| |||||||| ||||| | ||| || || ||||| || | ||||||||| | Sbjct 1574285 AGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGT 1574344 Query 118813 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 | ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| Sbjct 1574345 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGG 1574404 Query 118873 ACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCC 118928 || ||||| || | ||| | | || | || | | || | | | || | ||| Sbjct 1574405 CCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTG-CCC 1574460 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || | |||| ||||| ||| || || || || || || || | || | ||| || Sbjct 1574461 TCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCA 1574520 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || | ||||| | || | ||| | ||| || ||||| ||||||||||| Sbjct 1574521 GGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAA 1574580 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 1574581 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGG 1574640 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 1574641 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1574700 Query 119169 ATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | | ||| | || ||| |||||| ||||||| |||||| ||| || Sbjct 1574701 AAAG-CACCT--GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1574757 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 119280 ||||||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 1574758 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC- 1574816 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | || | | | ||| | | | ||| ||||| || ||| ||| ||||| | Sbjct 1574817 -AGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGG 1574875 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | || | ||||| | ||||||| || || || ||| |||| | | | | || Sbjct 1574876 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA 1574935 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 |||| |||| ||| ||| || || || || ||||||||||| || | || || Sbjct 1574936 AGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCG 1574995 Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCC 119517 ||| | | |||| |||||| | ||| ||||||||||| || | || || || | Sbjct 1574996 TGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG-ATATCATCAC 1575052 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577 | ||||| | || || ||||| | ||||| || || || || | |||| | Sbjct 1575053 CCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGT 1575112 Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | | | ||||||| |||||| ||||||| ||||| || Sbjct 1575113 CAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1575158 >seq4 Length=4774899 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || || || |||||||| || |||||| || ||| ||| |||| Sbjct 1861012 CAGCTTGGCACCGTAACCGTTACGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 1861071 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || |||||| |||| || ||| | | || | |||||||||||| Sbjct 1861072 GGAACCCGCCAACAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 1861131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431891371680