Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02]
428 sequences; 43,948,611 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1 163 9e-35
seq8 145 2e-29
seq9 96.9 1e-14
>seq1
Length=6191809
Score = 163 bits (180), Expect = 9e-35
Identities = 441/668 (66%), Gaps = 9/668 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 2104740 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 2104799
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || |||| ||| || || | || ||
Sbjct 2104800 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCTCAGAACACT 2104859
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439
|| || || || |||||| | || ||| | | || | || | | | || | |
Sbjct 2104860 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 2104917
Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499
|| | || ||||| || || | | || | | ||| |||| || || || || ||||
Sbjct 2104918 ATATGAAGCATTTCCCCTTCAAGATCGT-CGACAAG--GGTGGCAAGCCCATCATCGAGG 2104974
Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
| || | || || || || || || || ||||| || || || | ||| | |
Sbjct 2104975 TCGAGTTCAAGGGCGAGACCAAGACC-TTCAGCCCCGAGGAGATCTCTGCTATGATCCTC 2105033
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | ||||| | || | || || || || | | |||||| ||
Sbjct 2105034 ACCAAGATGCGCGAGACCGCTGAGTCTTACCTTGGCGAGACTGTCAACAACGCTGTTGTT 2105093
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || ||| | |||||| || || || |||||||| |||
Sbjct 2105094 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 2105153
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || ||||| |||| || || || || |||||||| || ||||| || ||
Sbjct 2105154 GCCGGTCTTAACGTTCTTCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 2105213
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
|||||||| | | || || || | || || || ||| | |||||||||||
Sbjct 2105214 CTTGATAAGAAGGTCGAGGGCGAGCGTAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 2105273
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | || || |||
Sbjct 2105274 TTCGATGTGTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 2105333
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || ||||| || || || ||||| ||
Sbjct 2105334 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAACGAG 2105393
Query 349919 TTTAAGCG 349926
|| |||||
Sbjct 2105394 TTCAAGCG 2105401
Score = 116 bits (128), Expect = 1e-20
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || || | | |||||| ||||||||| |||| ||| || |||||
Sbjct 1968923 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGC 1968864
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| ||||| | ||||| ||
Sbjct 1968863 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGCTGGGAGTGAG 1968804
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || |||| | || || | || | || || | ||| | || ||
Sbjct 1968803 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 1968744
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||||||||| |||| || || ||| | ||||| || || || || ||| | ||
Sbjct 1968743 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 1968684
Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473
|||| |||| |||| |||||||| ||||||
Sbjct 1968683 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 1968651
Score = 104 bits (114), Expect = 7e-17
Identities = 103/133 (77%), Gaps = 3/133 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
||||||||||| | ||||||||| || || | ||||| || || ||||| || ||
Sbjct 1969684 CGTGGCACACCGAGGGTAACATTC---TTGGACGACACACCGGCGAAATGGAAGGTGTTC 1969628
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| ||||||||||| |||||||| || | ||| |||||||||||
Sbjct 1969627 AGTGTCATCTGGGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 1969568
Query 377578 CCAGGATTGACAA 377590
||||| |||||||
Sbjct 1969567 CCAGGGTTGACAA 1969555
>seq8
Length=4055048
Score = 145 bits (160), Expect = 2e-29
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || |
Sbjct 2978616 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 2978557
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || ||||| || || || || || || | |||||||| |
Sbjct 2978556 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 2978497
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || || || ||||| | || || |
Sbjct 2978496 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAG 2978437
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || |||| ||||| ||||| | || || || || ||||||||
Sbjct 2978436 ACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2978382
>seq9
Length=3473953
Score = 96.9 bits (106), Expect = 1e-14
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || || || || || ||||| || || || || || ||
Sbjct 2591655 CATACCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 2591596
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 2591595 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 2591536
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | || || | ||
Sbjct 2591535 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 2591476
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 2591475 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 2591425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515246090723684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |