Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 421 7e-113 seq9 150 2e-31 >seq6 Length=4141359 Score = 421 bits (466), Expect = 7e-113 Identities = 852/1244 (68%), Gaps = 44/1244 (4%) Strand=Plus/Plus Query 78690 CCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGA 78749 ||||||||| || ||||||||||| || || || || |||||||| || ||| | Sbjct 1573875 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 1573934 Query 78750 TCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGC-AGGGCCGCGTGGTACACAGCCTCGA 78808 ||||||||||| || || | ||| | || ||||| ||||| || | | ||||| Sbjct 1573935 ACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGA 1573993 Query 78809 AGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACG--AAAGGCCGAGCATCAT 78866 |||| |||||||||||| || |||| || ||||| | | | || ||||| | Sbjct 1573994 AGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCA--AG 1574051 Query 78867 GAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTT 78926 ||| ||||||| ||||| || || || | | | || ||||||||||||||||| || || Sbjct 1574052 GAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGTT 1574111 Query 78927 TCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGAC 78986 || ||| ||| | ||||| |||| |||||||| ||||||||| || | || Sbjct 1574112 GCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAAC 1574171 Query 78987 GACCCGAGTCACCTCGTACAATTTGGCGAAATCAAA--ATGATT--TCCT--TTGATGAA 79040 ||| || | |||| || || || ||| || | | | || || | |||||||| Sbjct 1574172 AACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAA 1574231 Query 79041 AGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTC 79100 | || || |||| || || |||||||| || || |||||| || | | ||| Sbjct 1574232 GGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTC 1574291 Query 79101 GATGATTTCTGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTC 79158 ||| ||||| ||||| | || || ||| |||||| |||| |||||| ||||||||| Sbjct 1574292 GATAATTTCAGTGCAAAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTC 1574349 Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTG 79218 || ||| ||||| ||||||||| |||| | || | ||||||||| ||| || Sbjct 1574350 TTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCA 1574409 Query 79219 AGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC---- 79274 |||| | ||| ||| | | | | ||| | | ||||| ||||||| ||| Sbjct 1574410 AGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTG---CGACCCT-TGCCCTC 1574462 Query 79275 ---GACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331 || || | ||||| | | ||| |||| |||||| |||| ||||| || Sbjct 1574463 CTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGG 1574522 Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391 |||||||| ||||||||||| |||||| ||| ||| ||||| || |||||| || Sbjct 1574523 GCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAG 1574582 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 || |||||||| ||||| ||| || || ||| ||| | |||||| | || ||||| Sbjct 1574583 ATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTT 1574642 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | ||| || || || || || | || || | |||||| ||||| || |||||||| || Sbjct 1574643 CTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAA 1574702 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 | ||| |||||| ||| ||||||| ||| ||||| || ||||||||||| || || Sbjct 1574703 AGCACCTGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACG 1574762 Query 79572 GAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTC 79629 ||||| || || | || | ||| | ||||| || ||| ||| || || | Sbjct 1574763 AAGCATAGGAACAACACCAT--TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 1574820 Query 79630 GCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCA 79688 || ||||| | ||| | | ||||| || || | | ||||||||| || || Sbjct 1574821 GCACGAAT-ACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGGCACA 1574879 Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 |||||| || |||||||| ||||| || ||||||||||||| | |||| |||||| Sbjct 1574880 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCA 1574939 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 |||| || || | || ||||| |||||||| || || | || |||||||| Sbjct 1574940 AGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAA 1574999 Query 79809 GAACTTTTGGCT---CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTG 79865 |||||| ||| |||||||| ||| |||||| ||| ||| || || || || Sbjct 1575000 GAACTT---GCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCA 1575056 Query 79866 GATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCGTCTCG 79908 ||| || || | || ||||||| | || ||| ||||| |||| Sbjct 1575057 GATACCAACAGACACACGCATGATCATGTGCTGAGGGCG-CTCG 1575099 Score = 370 bits (410), Expect = 1e-97 Identities = 833/1235 (67%), Gaps = 26/1235 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| || | || || ||| || || || || ||||||| Sbjct 1575092 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1575033 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 ||||||||| | |||||| | || |||||||||||||| || | || || || || Sbjct 1575032 TTGGAGACATACAATCTGATGT-CTAGCAAGTTCTTCACGCATGCTTCCCCCACTCTCTT 1574974 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 ||| ||||| || | || || |||| || ||| | || | ||||||||| || Sbjct 1574973 CAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 1574914 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 ||| |||||||| |||||||| || |||||| || || ||||||||| | | || Sbjct 1574913 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 1574854 Query 19342 GGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 |||||||| | | ||| | ||| || | | ||| || ||| || || | Sbjct 1574853 TGGTATCGGTCTAAATGTGCACCG-TATTCGTGCTACTGGCTCATACATCGCCGGTACCA 1574795 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 |||| | | | ||| | || || ||||| || |||||||||||||| || |||| | Sbjct 1574794 ACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTATG 1574735 Query 19461 TCAACCAGGGGGGCGGCAAACG--CAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 || ||||||| ||| ||| || || | ||| || ||||||||||||||||| ||||| Sbjct 1574734 TCGACCAGGGTGGCAACAAGCGACCAGGTGCT--TTTGCCATCTACCTCGAGCCTTGGCA 1574677 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 | | || ||| | |||||||| || || || |||||| ||| | |||||| | || Sbjct 1574676 CTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCCGTGC 1574617 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 || || || ||| ||| | ||||| || || || |||||| || ||||| ||| | Sbjct 1574616 CCGTGATCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 1574557 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 || || ||| ||||||||||| |||| ||||||||||| ||||| ||| || || Sbjct 1574556 CGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTATGGAGA 1574497 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCC-GGTTCAAGAAGGTGGTCC 19757 || ||| | | ||||| | | || ||||| || || ||| || Sbjct 1574496 GGAATTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGC-AAGACAATCA 1574438 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 ||| | | | | ||| || | | || | |||| |||||||| | || | || Sbjct 1574437 AGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATTCA 1574378 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC--AA 19875 || ||||||||| ||| ||| |||| || || |||||| |||| | ||| || Sbjct 1574377 TGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAA 1574318 Query 19876 GTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTG 19935 | |||||||| || |||||||| || ||| | || |||||| || || || Sbjct 1574317 GC--TCCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAGGTCGCTGTCTG 1574260 Query 19936 TAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT------CCTCCTTCGACTT 19989 || || || || |||| ||||| | ||| |||| | | | || |||||| Sbjct 1574259 CAACCTTGCCTCTCTGTCTCTGCCCTCCTTCATCAACTACGATGAAGCTTGCTACGACTT 1574200 Query 19990 TGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 || || || |||| | | ||| || | || || ||||| |||||||| Sbjct 1574199 CAAGAAGCTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATCGATGT 1574140 Query 20050 GAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 |||| ||||| | ||| ||| ||||| || ||||||||||| || || | | Sbjct 1574139 GAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCTATTGGTCT 1574080 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT--CATTCGACGATCCC 20167 || || || ||||| ||||| | |||| | ||||| || | | | ||||| ||| Sbjct 1574079 TGGTGTTCAAGGCCTTGCCGATGCTTTCCT--TGCTCTGCGTATGCCCTTCGAGTCACCC 1574022 Query 20168 AAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTC-CTGGA 20226 |||| || |||||||||||| ||||||||| || | || ||||| |||||| ||| Sbjct 1574021 GAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTATCACGCTGCCCTCACTGCC 1573962 Query 20227 ATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 ||||| | || || || ||||| || || ||| || |||||||| || ||||| || Sbjct 1573961 TCCGTGC-AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGTTCTCCCGCATC 1573903 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA 20321 ||||||||||||||| ||||||||| ||||| Sbjct 1573902 TGAGGGTATCCTCCAGTTTGACATGTGGAACGTCA 1573868 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| || | ||||||||||| |||||||| || |||||| || | |||||||| Sbjct 1573399 GTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCTGCGAAGTGCATAC 1573458 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | | |||| ||| | |||| || |||| |||||| || ||||||||||| || | Sbjct 1573459 TGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAA 1573518 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||||| || || || ||||| | | |||| || | |||||||||| | Sbjct 1573519 TGAATGCACCTCGATCCGCAGCCATCTGAACGACCTGGCGCTGAGAGATCTCCCAGACAG 1573578 Query 78368 TCCGGTAAATGGCCTT 78383 || ||| | ||||| Sbjct 1573579 TCTTGTACAGAGCCTT 1573594 >seq9 Length=3473953 Score = 150 bits (166), Expect = 2e-31 Identities = 552/839 (66%), Gaps = 38/839 (5%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | ||| |||||| | | ||||||||||| ||| || || | Sbjct 1909325 TGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGATC 1909266 Query 59653 TGAAGGATTGGGACAAGCTC--AATTAC-GACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | || ||| |||| | | || | | || |||||| || || |||| | Sbjct 1909265 TCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCTCACATCCTTG 1909206 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 | |||||||| || |||||| || || | || || | | | || | ||| || Sbjct 1909205 CTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTC--GAGCGATTCAGTGG 1909148 Query 59770 --ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTAT 59827 | |||||||| | ||||| || | ||||||| | ||| | | ||| || Sbjct 1909147 CGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 1909088 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGA--AGAGAAG 59885 || |||||||| ||||| ||| | ||||| | | ||||||| || | || ||| Sbjct 1909087 TCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGCCCAGCGAAC 1909028 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 || ||| ||| ||||| ||||| | ||| ||| || | || || || ||||| Sbjct 1909027 -CTA-TCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA-AGAAGGCTGACTGGGC 1908971 Query 59945 CATGCAGTGGATG-AG--TCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 ||| | ||||| || | || | || ||||| || |||||| | || ||||| || Sbjct 1908970 CATCCGATGGATCCAGGATAAGGGCTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TG 1908912 Query 60002 C-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 | || || || ||||||||| ||| | ||| | || ||||||||||| ||||||| Sbjct 1908911 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTG 1908852 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 | |||||||| || |||| ||||||||||||||| || || || |||||||| || || Sbjct 1908851 GTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACA 1908792 Query 60121 AGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAG--GATA 60177 || ||||| || | ||| | || ||||| || |||| |||| ||| Sbjct 1908791 CTGACTTTGC-CTGCCTCCTCCACTCTCACCTCAAGG-GTCGTGCC--AGCAAGCAGATG 1908736 Query 60178 TTCACAAGAT-TGTTCAGTGGGCTTGTGA-AGTGGAGAGCGAGTTCATCACAGAAGCGCT 60235 || || ||| | ||| || || | | ||| ||||| |||| ||||| || Sbjct 1908735 ATC-CAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCACCGAAGCTCT 1908677 Query 60236 TCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGC 60295 ||| || ||| | || ||| || ||| |||| ||| |||||| |||| ||||| Sbjct 1908676 TCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAATACATTGAGTTCGTCGC 1908617 Query 60296 GGACCGCCTCATGGCCCAGTTTG-----GAGAAGGACCAATTTACGGCGTGAATAACCCT 60350 || || ||| | | | ||| ||||||| | ||| | | ||||| Sbjct 1908616 TGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGG-----TCTACAAGGCCACCAACCCC 1908562 Query 60351 TTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGT 60409 ||||||| ||||||| |||||| | | || ||||||||||||||||||||||| || Sbjct 1908561 TTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGT 1908503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521865392320