Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 219 5e-52 seq9 118 1e-21 seq4 107 2e-18 >seq6 Length=4141359 Score = 219 bits (242), Expect = 5e-52 Identities = 524/779 (67%), Gaps = 30/779 (4%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 1575092 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1575033 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 ||||| ||| | | ||| ||| |||| ||| ||||| || | || || || Sbjct 1575032 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACTCTC 1574976 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || || || ||| || || |||| |||||| |||| | |||||||| Sbjct 1574975 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1574916 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || |||||||| || |||||| |||||| ||||||||| | | Sbjct 1574915 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1574856 Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 |||||||||||| | | ||| | | | | ||||| | ||| || ||| || | Sbjct 1574855 GGTGGTATCGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 1574798 Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 | ||||| | ||| |||| | || |||||||| || |||||||||||||| || || Sbjct 1574797 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 1574740 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 ||| ||| |||||||||| ||||| | ||| | | || ||||||||||||||||| | Sbjct 1574739 GTATGTCGACCAGGGTGGCAACAAGCGACCAGGTG-CTTTTGCCATCTACCTCGAGCCTT 1574681 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| | || | | || || || || || ||| ||| || ||| | || ||| | | Sbjct 1574680 GGCACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCC 1574621 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 | |||||| || || || || ||||| || || || |||||| | || || | Sbjct 1574620 GTGCCCGTGATCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAA 1574561 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTAC 53770 || ||| || ||| ||||||||||| ||||||||||| |||||| | | || ||| Sbjct 1574560 AGAACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTAT 1574502 Query 53771 GGTGAGGAGTTTAACGAGATGTATCGGACGT-----ACGCAGTTC-AGGGCCGCTACAAG 53824 || ||||| || | | |||| | || | | || | |||| ||| Sbjct 1574501 GGAGAGGAATTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGC------ 1574448 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 |||| ||||||| | || | ||| | || || || || |||| ||||| ||| Sbjct 1574447 AAGACAATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 1574388 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | || | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 1574387 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 1574329 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| ||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | || Sbjct 1573538 TGCGGATCGAGGTGCATTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 1573479 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 1573478 CACGATGGGCAAGATCACCAGTATGCACTTCGCAGGCTGGAAGCTTGGCCTCAAGACCGG 1573419 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 1573418 CATGTACTACCTTCGTAC 1573401 >seq9 Length=3473953 Score = 118 bits (130), Expect = 1e-21 Identities = 528/815 (65%), Gaps = 36/815 (4%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| ||||| ||||||||||| || | | |||||||||||||| ||||||| Sbjct 1908503 ACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAG 1908562 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AGGCGATCCGCC 74588 ||||| | || ||| | |||||| | || | | || | || ||||| || Sbjct 1908563 GGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCG 1908619 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | |||||| ||| |||| | | | |||||||| ||| || || || Sbjct 1908620 ACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGA 1908679 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACAATCTTGTGAATG 74705 || ||||||| |||||| ||| | | || || || || | || | || Sbjct 1908680 GCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATC 1908739 Query 74706 TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATG 74764 | ||| ||||| || | |||||||||| || | || |||||| || || Sbjct 1908740 TGCTTGCT--GGCACGAC-CCTTGAGGTGAGAGTGGAGGAGGCA-GGCAAAGTCAGTGTG 1908795 Query 74765 CGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACG 74824 || || || | || | || || || || | || |||||||| || ||||| Sbjct 1908796 AAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACG 1908855 Query 74825 CTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884 |||||| | ||| ||||||| ||||| ||||||||||||||| || || ||| || Sbjct 1908856 CTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGC 1908915 Query 74885 AAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGA--GC 74938 |||||| || || || || || || || | | | || ||||| || || || Sbjct 1908916 AAAGGCAACGAGACGCTGGGC-AAAGGAGGAGCCCTTATCCTGGATCCA--TCGGATGGC 1908972 Query 74939 CCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCT 74997 ||| ||||| ||| || | |||||| | || || || || | |||||| | | Sbjct 1908973 CCAGTCAGC-CTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAG--ATAGGT 1909029 Query 74998 TCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || || |||| ||||||| | |||| || | || ||||| ||||| |||||||| Sbjct 1909030 TCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAAT 1909089 Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT--CC 75113 ||| | | |||| | ||||||| | || ||||| | ||||| || | || Sbjct 1909090 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCC 1909149 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 |||| || | ||| ||||| ||||||| || || ||||| ||||| ||||| Sbjct 1909150 ACTGAATCGCTC--GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCA 1909207 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGTTTGTCCCAATCCTTCAGG 75230 || | || |||| ||||||| |||| | | |||| ||| || | || Sbjct 1909208 AGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGA 1909267 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| | | |||||||||||| | |||||||| Sbjct 1909268 TCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 1909302 >seq4 Length=4774899 Score = 107 bits (118), Expect = 2e-18 Identities = 270/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | | Sbjct 1858946 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 1859005 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992 ||||| | | | ||||| || || | | | || | || | | ||| || Sbjct 1859006 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 1859061 Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 || | ||| ||| || | | ||| || ||| |||||| |||| || | ||||| Sbjct 1859062 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 1859121 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 1859122 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 1859181 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| | ||| ||||| ||||| |||| | || || || ||| | ||| Sbjct 1859182 GTTGTTTGAGCCGACGAAGTTCTGGGCCAGGCCGATGATAGTCTGTTGAAGAGACTGTTC 1859241 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||||||| | || || || ||||| | | |||||| |||| Sbjct 1859242 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 1859301 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | | ||| |||||| |||||| || || ||||| ||||| Sbjct 1859302 TTTGACGATGTTTCTCTTGAAACAGGCATATATGACCTTACGCTG 1859346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213072394400