Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 293 3e-74 seq9 161 1e-34 seq8 149 7e-31 seq10 123 3e-23 >seq6 Length=4141359 Score = 293 bits (324), Expect = 3e-74 Identities = 819/1235 (66%), Gaps = 29/1235 (2%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||| ||| | ||| ||||| || || ||||| ||| ||| || ||| || Sbjct 1573875 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 1573934 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAA 80659 |||||| ||| ||||||| |||| || | ||||| |||||||||||| ||| | Sbjct 1573935 ACCCTCCTCCTTAGCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGA 1573993 Query 80660 AGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 ||| |||||| | | || |||| || ||||| | || | || | || Sbjct 1573994 AGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGA 1574053 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGC 80778 | | || || ||||| ||||| || | | || || ||||||||| |||| | | || Sbjct 1574054 AAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGTTGC 1574113 Query 80779 TCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | ||||| | | ||||| ||| |||||||| |||||||||||| ||||| Sbjct 1574114 GAG-CCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACA 1574172 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCG 80896 ||| | | || | || || |||| |||||| | | ||| | | ||| | Sbjct 1574173 ACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAG 1574232 Query 80897 GAAGGCT----CAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 || ||| ||| || || || ||||| || || ||||| |||| | | ||||| Sbjct 1574233 GAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCG 1574292 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACT 81010 | ||||| ||||| | || || ||| || ||||| ||||| || ||||| || Sbjct 1574293 ATAATTTCAGTGCAAAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCT 1574350 Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070 || |||||| || ||||||||| |||| | ||| | |||||||| ||| | || | Sbjct 1574351 TGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAA 1574410 Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130 | ||||||| ||||| || | ||||||| |||||| ||||| || | | Sbjct 1574411 GAATGGCGTACCAAAGCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGA 1574470 Query 81131 ACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCG 81189 |||| |||| | ||||| | | || | | ||| | | |||| | ||||||||| Sbjct 1574471 ACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGT-CGGCGAGGCCAGGGCACTCG 1574529 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 || ||||||||||| |||||| || || || ||| |||||||||| |||||| Sbjct 1574530 TTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGG 1574589 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 ||||| ||||| ||| || || ||| || ||||||| | ||| ||||| || Sbjct 1574590 ATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGG 1574649 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369 | || || || || | || || | ||||| ||||| || || | ||| | | | || Sbjct 1574650 AGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG-CACC 1574708 Query 81370 TTG-CG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 | | || ||||||||||| ||| || || ||||| ||| || ||||| | ||| Sbjct 1574709 TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCAT 1574768 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--C 81483 ||| | | ||||| || |||||| ||||| |||| || || | || || Sbjct 1574769 AGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAAT 1574828 Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 || ||| ||| |||||||| ||||| | | ||| || ||| ||||| || Sbjct 1574829 ACGGTGCACATT--TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTG 1574886 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || || || |||||||| || || || | ||||| |||| |||||| || |||| Sbjct 1574887 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAC 1574946 Query 81604 ATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 | || ||||| | |||||||||||| || || |||| || || |||| | Sbjct 1574947 AATTG-GGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTT 1575005 Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGAT 81722 | | |||||||| | || || ||| ||| || ||||| ||||| ||||| | Sbjct 1575006 GCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAAC 1575065 Query 81723 AGCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 || |||||||| | ||||| ||| ||||| |||| Sbjct 1575066 AGACACACGCATGATCATGTGCTGAGGGCG-CTCG 1575099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| ||||||||| | |||| Sbjct 1573395 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCTGCGAAGTGC 1573454 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 1573455 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 1573514 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||| || || ||||| || ||||| Sbjct 1573515 TCAATGAATGCACCTCGATCCGCAGCCAT 1573543 >seq9 Length=3473953 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 2591425 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 2591484 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 2591485 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 2591544 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 2591545 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 2591603 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || |||||||| Sbjct 2591604 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGCGGTGG 2591651 Score = 127 bits (140), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||||||||| ||||| | || || || || |||| |||||| Sbjct 1908987 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGGCTCCTCCTTTGCCCAGCGT 1908928 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| ||| || || || ||||| ||| | ||| || || ||| Sbjct 1908927 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTC 1908868 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 1908867 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGT 1908808 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| || ||| || ||||| Sbjct 1908807 GACGAGGGTCTTCACACTGACTTTGC 1908782 >seq8 Length=4055048 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| ||||| || ||||||||||| Sbjct 2978379 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCT 2978438 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| || | ||| | || ||||||||||||||||| || || || ||| Sbjct 2978439 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGAC 2978498 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || || || | || || Sbjct 2978499 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 2978558 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| |||||||||||||| || | || || || ||||| Sbjct 2978559 AACATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGG 2978608 Score = 120 bits (132), Expect = 3e-22 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||| || ||||||||||||||||| |||||||| || ||||||||||| || || | Sbjct 2978799 TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTTATCTTCG 2978858 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCC 27600 |||| ||||| || || |||| || ||| | ||| ||||| || |||| ||||| || Sbjct 2978859 CTGGCAAGCAGCTGGAAGATGGCCGCACCTTGAGC-GACTACAACATCCAGAAGGAGTCA 2978917 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||| || || | || |||||||| || || Sbjct 2978918 ACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 2978952 >seq10 Length=3085006 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || ||||| ||||| ||||| || | ||| Sbjct 1539727 TTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCATC 1539786 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 1539787 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 1539846 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 1539847 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1539906 Query 27595 G 27595 | Sbjct 1539907 G 1539907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307348839360