Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59 194 2e-44 seq279 120 4e-22 >seq59 Length=53314 Score = 194 bits (214), Expect = 2e-44 Identities = 621/956 (65%), Gaps = 12/956 (1%) Strand=Plus/Plus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 45098 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 45157 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 ||| || | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 45158 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 45217 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || |||||||| | || || ||| |||||| || | ||| || | ||| | Sbjct 45218 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 45277 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAA 53946 ||||||| ||| | ||| | ||| | ||| ||| | | |||| Sbjct 45278 CTTCTGAGCCTTGATTGTC---TTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAG 45334 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 || || || ||||| | | | | | ||||| || || | || ||||||| Sbjct 45335 AGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAG 45394 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 45395 TGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAG 45454 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || ||||| | || | ||||| || || ||||| ||||| ||||| | Sbjct 45455 GAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAATC 45514 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | |||||| ||||| || || | ||| |||| | | | || || || ||||| || Sbjct 45515 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCC 45574 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | || | ||| ||||| || | || | | ||| |||| || |||||| Sbjct 45575 ACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 45634 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGAT 54304 |||| ||| ||||| |||| ||| || ||| | ||||||||| | | ||| | Sbjct 45635 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT--T 45692 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 ||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 45693 AGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATT 45752 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 ||||| ||||| || ||| |||| | || | || || |||| |||| | || Sbjct 45753 CCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGG 45812 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || || ||||| ||||| || | || ||| | |||||| Sbjct 45813 GTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTG 45872 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | || || ||||| || || | || || | |||||||| | Sbjct 45873 TATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGAT 45931 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| | || | ||||| || || || || | ||| ||| ||||| Sbjct 45932 CATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAA 45991 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 ||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 45992 AGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 46047 >seq279 Length=355525 Score = 120 bits (132), Expect = 4e-22 Identities = 551/863 (64%), Gaps = 21/863 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| || | ||||| || ||||| || || || || || | | || || || Sbjct 83271 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 83212 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGA-AAT 23962 |||||||| ||| | || ||||| | || |||| ||| | | |||| || || Sbjct 83211 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGAC-CTTCTCGTTGCCAAGAGCGACAAG 83153 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | | ||| ||||| ||||| || ||| ||||| | ||| | ||||| || | || Sbjct 83152 GAGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAG 83093 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | |||||||| | || ||||| || || ||||| | ||| || || || || || Sbjct 83092 GGCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGAT 83033 Query 24083 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 24137 | | ||| || || || | ||| || | | || | | | || Sbjct 83032 A-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAG 82978 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || || ||| ||||||||||| | | || | |||||||| || || || || Sbjct 82977 GCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCA 82918 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || |||||||| || ||||| || ||||| || || | ||| ||||| || Sbjct 82917 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATA 82858 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATC 24314 || || || || |||||||||| || | | || | || | | || || ||| Sbjct 82857 CCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 82798 Query 24315 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 || | || ||||| || ||||||||| | || || || ||||| || || || || Sbjct 82797 CATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAA 82739 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 ||||||| || | || || | ||||| || || | || || | || Sbjct 82738 GAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTC 82679 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 ||||||||||| || || || || || |||||||| || | |||||| | ||||| Sbjct 82678 GGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTG 82619 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || || || ||||| || | | || || || || || || ||| ||| || || Sbjct 82618 GACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAA 82559 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATC 24610 || || | | || | ||| | | || || | |||| | || ||||| || Sbjct 82558 GAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTC 82499 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 | || ||| || || | ||| | || || | ||||| || || ||||| ||||| || Sbjct 82498 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 82439 Query 24671 ATACATATTCCAGATGTCATGAT 24693 ||||| | ||| || | ||||| Sbjct 82438 GTACATTTGCCAAATCT-ATGAT 82417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714853838320