Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq279 269 3e-67 seq224 147 2e-30 seq13 132 5e-26 seq601 114 1e-20 >seq279 Length=355525 Score = 269 bits (298), Expect = 3e-67 Identities = 551/809 (68%), Gaps = 16/809 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 82424 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 82483 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| | | | | |||| || || Sbjct 82484 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTC 82542 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || |||||||||||||| || |||||||| Sbjct 82543 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 82602 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | | ||||| || |||||||||||||| |||||| || Sbjct 82603 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 82662 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | || || || | || || |||||||||||| ||| | | || | Sbjct 82663 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGC 82722 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | || |||||||| ||||| || || ||| || | |||||| Sbjct 82723 CCA--GCGAACCTA--TCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 82778 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| | || |||||| | | || || |||| | | |||| || || | Sbjct 82779 CTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 82838 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || || ||||| ||||||| || |||||| |||| || ||||||| Sbjct 82839 CCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCA 82898 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||||| || ||||||||| ||||||||||||||| | ||||||| Sbjct 82899 AGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGG 82958 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 82959 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGC 83018 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| |||| || || ||| |||| |||||| || |||||||||| Sbjct 83019 AGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCACCGAAG 83078 Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | | | || |||| || || || | || | || ||| ||||||||| |||||| Sbjct 83079 CTCTTCCCTGTGC-CCTCCTCGGCATGAACTCTGACCTCATGAAGCAATACATTGAGTTC 83137 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| || | | || ||| |||||| | ||||||| Sbjct 83138 GTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCC 83197 Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 83198 TTCGACTTCATGGAGAACATCTCCCTTGG 83226 >seq224 Length=426345 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 275270 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 275211 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 275210 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 275152 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 275151 CCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 275092 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 275091 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 275059 >seq13 Length=660952 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || |||||| ||| Sbjct 443217 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 443158 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || || |||| || Sbjct 443157 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCA 443099 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | |||||| | | ||||||||| Sbjct 443098 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCTTGAGCGACTACAA 443039 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 443038 CATCCAGAAGGAGTCAACTCTTCACCTCGT 443009 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||| ||| |||| || || | || Sbjct 443955 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 443896 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| |||||||||||| | ||||| Sbjct 443895 GACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 443837 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | ||| ||||| ||||| || |||| ||||| ||| || ||||| Sbjct 443836 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 443777 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || ||||| || Sbjct 443776 CATTCAGAAGGAGTCCACTCTTCATCTTGT 443747 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| ||||||||| | || || || | |||| | Sbjct 443667 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACT 443608 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | | ||| || |||| ||||| ||||||||||| | |||||||| || Sbjct 443607 ATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 443548 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || || || || || || |||| || ||||| |||||||||||| || Sbjct 443547 CTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAA 443488 Query 40876 AAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| | || || ||||| || | ||| | | ||||| Sbjct 443487 AAGGAATCTACTCTTCATCTCGTCCTCCGCCTCCGTGGCGG 443447 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||| || | || ||||| | || Sbjct 443445 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 443386 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || |||| || Sbjct 443385 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAA 443326 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| || || || || | || || || |||||||||| Sbjct 443325 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 443266 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 443265 ATCCAGAAGGA 443255 >seq601 Length=214759 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| |||| ||||| || | |||| | | Sbjct 52175 TTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCATC 52234 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || ||| ||||||| || ||||| Sbjct 52235 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 52294 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 52295 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 52354 Query 40879 G 40879 | Sbjct 52355 G 52355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213345821840