Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq279 159 7e-34 seq59 100 6e-16 >seq279 Length=355525 Score = 159 bits (176), Expect = 7e-34 Identities = 302/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| |||||||| ||||| ||||| |||||| Sbjct 82835 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGG 82894 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | ||| Sbjct 82895 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGAC 82954 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT----GTTGA--AAAAGGGTTTTGTTGAT 102091 || |||||||| |||||||| ||| | || | | |||||| || Sbjct 82955 GAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTG----- 83009 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| | | ||| | || || ||||||| |||||| ||||| || || Sbjct 83010 ---CCAGCAAG-CAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAG 83065 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 |||||||| | | || || | | | || ||||||| | | |||| || Sbjct 83066 TTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAA 83125 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| || || || ||| || | || | | || || ||| ||| || Sbjct 83126 TACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAG 83185 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||||| |||||||| || || ||||| | ||||||||||| || Sbjct 83186 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTC 83245 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 83246 GAGAAGCGTGTTGCCGACTACCA 83268 >seq59 Length=53314 Score = 100 bits (110), Expect = 6e-16 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| |||||||||| || || ||| |||||||| || || ||| Sbjct 45696 CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCC 45755 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 ||||| || || || | | | | | |||||| || || | |||||| ||| | | Sbjct 45756 TCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGC-TGAGGGGT 45814 Query 94906 -CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || ||| || || |||||||||||||| || || | | || ||||| |||| || Sbjct 45815 GCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTA 45874 Query 94965 TGTTTCAATGACAGATTTGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 ||| || | ||| | ||| || | | || || | || |||| ||||||||| |||| Sbjct 45875 TGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGATCA 45933 Query 95024 TGTCCTGAGGGCGCTC 95039 ||| |||||||||||| Sbjct 45934 TGTGCTGAGGGCGCTC 45949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572474748095