Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59 172 7e-38 seq279 134 2e-26 >seq59 Length=53314 Score = 172 bits (190), Expect = 7e-38 Identities = 632/980 (64%), Gaps = 30/980 (3%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 45098 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 45157 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 45158 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 45217 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 45218 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 45276 Query 63128 GACTC-GAGCCTTTATTATA----GAT--TTGTATCTCCTTTCTC-----TTTCGTATAG 63175 | || ||||||| ||| | || ||| |||||| ||| ||||||| || Sbjct 45277 GCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCC-CTCCTT-CTCGAACTTTTCGTACAG 45334 Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 || | |||| || ||||| | | | | | | ||| || || | || Sbjct 45335 AGCCT---------CGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGG 45385 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||||| | ||| || |||| | | || || ||||| || |||||||| ||||| Sbjct 45386 GCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 45445 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 ||| || | || ||||| | | | ||||| || || ||||| ||||| Sbjct 45446 AAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATC 45505 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||| | | | |||||| ||||| || || | ||| ||||| | | | || || || Sbjct 45506 AAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCG 45565 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||||| || ||||| || | || | ||| ||||| || | || | | ||| |||| Sbjct 45566 CTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAAC 45625 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TA 63533 || ||| || ||| |||| |||||||||| ||| || ||| | ||||||||| | Sbjct 45626 AACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTG 45685 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | ||| |||||| || || || ||||| || ||||| | || || || | || Sbjct 45686 CACATT--TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 45743 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || ||||| || || || || || || |||| | || | || || |||| |||| Sbjct 45744 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 45803 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | ||| || || ||||| || | || || ||||| ||||| || | || ||| Sbjct 45804 GGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGAC 45863 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGAC 63772 | |||||||| ||||| | || || ||||| || || | || || | || Sbjct 45864 ATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACAC 45922 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | |||||||||||| | || | ||| || || || || | | ||| || Sbjct 45923 ACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGA 45982 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | |||||||| || || ||||| || | |||| || || || || || | ||| | Sbjct 45983 TCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGC 46042 Query 63893 CGAATTGAGCTTATCCTTAT 63912 || | | || ||||||| Sbjct 46043 AGAGTCCAACTCCTCCTTAT 46062 >seq279 Length=355525 Score = 134 bits (148), Expect = 2e-26 Identities = 364/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || || ||||| || || Sbjct 82966 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 82907 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 82906 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 82847 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 82846 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 82788 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 82787 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 82728 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || | || || ||||| | || || | || |||||||||| Sbjct 82727 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 82668 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 82667 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 82608 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 82607 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 82548 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 82547 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 82488 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 82487 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 82428 Query 34129 AGATGTCATGAT 34140 | || | ||||| Sbjct 82427 AAATCT-ATGAT 82417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810443697520