Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq59 212 9e-50 seq279 129 8e-25 >seq59 Length=53314 Score = 212 bits (234), Expect = 9e-50 Identities = 632/961 (66%), Gaps = 22/961 (2%) Strand=Plus/Plus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || || || || || ||||| | || | | || | || ||||||||||| Sbjct 45098 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 45157 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| | ||||| || | || | ||| || ||||| ||| || ||||| Sbjct 45158 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 45217 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | || || ||| |||| | || | ||| || | ||| | Sbjct 45218 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 45276 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 79853 | || ||||||| ||| | |||| | ||| | ||| ||| | | | ||| | Sbjct 45277 GCTTCTGAGCCTTGATTGT---CTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACA 45333 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | | ||||| || ||||| | ||| | | ||||| || |||| || ||||| Sbjct 45334 GAGCC--TCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACAT 45391 Query 79914 CAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 || | ||| || || | || ||| || || ||||| || |||||||| |||||||| Sbjct 45392 CAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGG 45449 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || | || ||||| | || | |||||| || || ||||| ||||| ||| Sbjct 45450 GCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGG 45509 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | |||||| ||||| || || | ||| ||||| | | | || ||||| ||| Sbjct 45510 AAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTG 45569 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || ||||| || | || | ||| ||||| || | || | | ||| |||| || | Sbjct 45570 TTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACA 45629 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAA 80209 ||||| |||||||| ||||| |||| ||| || ||| | ||||||||| | | | Sbjct 45630 CCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACA 45689 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 || |||||| || || || ||||| || ||||| | || || || | ||||| | Sbjct 45690 TT--TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 45747 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 |||| ||||| || || || || |||| | || | || || |||| |||| | Sbjct 45748 AGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCT 45807 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 || || || ||||| || | || || ||||| ||||| || | || ||||| | Sbjct 45808 GAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCA 45867 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGC 80448 ||||||| ||||| | || || ||||| || || | || || | |||||| Sbjct 45868 GATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGC 45926 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | |||||||||||| | || | ||||| | || || | | ||| ||| Sbjct 45927 ATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGC 45986 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 |||||||| || || ||||| || | |||| || || || || || | ||| | ||| Sbjct 45987 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAG 46046 Query 80569 T 80569 | Sbjct 46047 T 46047 >seq279 Length=355525 Score = 129 bits (142), Expect = 8e-25 Identities = 363/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| ||||||||||| | | || || |||||||| || || || || ||||| || || Sbjct 82966 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 82907 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 82906 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 82847 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CTTTTGAG 50149 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 82846 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 82788 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 82787 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 82728 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || ||||| | || || | || |||||||||| Sbjct 82727 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 82668 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 82667 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 82608 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 82607 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 82548 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | ||| | || | | |||| | || ||||| || | || ||| | Sbjct 82547 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 82488 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 82487 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 82428 Query 50507 AGATGTCATGAT 50518 | || | ||||| Sbjct 82427 AAATCT-ATGAT 82417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260638670760