Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq279 251 1e-61 seq59 147 3e-30 >seq279 Length=355525 Score = 251 bits (278), Expect = 1e-61 Identities = 574/851 (67%), Gaps = 22/851 (3%) Strand=Plus/Plus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||| | |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| Sbjct 82417 ATCAT-AGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGA 82475 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | ||||| |||||||| || |||| ||| | | || | |||| ||||| | Sbjct 82476 TTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCT 82535 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 || | || ||||| | || ||||| || | ||| ||||| ||||||||||| || || | Sbjct 82536 TTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCG 82595 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248 | || |||||| | ||| | || || |||| |||| |||| ||||| ||||| Sbjct 82596 TCGAG-CGATTCAGTGGCGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGCTTCCA 82653 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 |||||||| |||||| | || || || | ||||| || || |||| ||||| Sbjct 82654 GATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAA 82713 Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || || | ||| || ||||| ||||| || || || | || | || || | Sbjct 82714 GGAGCCCGCCCAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 82772 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| || || |||||| | || | | || || | ||| | | | Sbjct 82773 AGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTC 82832 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | || || || || || || ||||| |||||||| ||| || || ||||||| | Sbjct 82833 TCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCT 82892 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || |||||||| || ||||| | |||||| | || ||||| | Sbjct 82893 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTG 82952 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| || ||| |||||||||| || || | ||| | | | | || Sbjct 82953 ACGAGGGTCTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGG 83003 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||||| | | | | || | || | || |||||||| | || || || | Sbjct 83004 GTCGTGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGG 83063 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||||||| |||||| | || || | | | |||||||||| | || ||| Sbjct 83064 AGTTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGC 83123 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 | ||||| ||||| || || |||||||| || || ||||| || ||| | | Sbjct 83124 AATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCT 83180 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 83181 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 83240 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 83241 TCTTCGAGAAG 83251 >seq59 Length=53314 Score = 147 bits (162), Expect = 3e-30 Identities = 317/465 (68%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| ||| | ||| ||||| | || ||||||||| | || Sbjct 45580 CAGGGTGGCAACAAGCGACCAGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 45521 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| ||| || |||| || ||| | || Sbjct 45520 GTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCCGTGCCCGTGAT 45461 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || ||| || ||| | || ||| | ||||||||||| || || |||||| Sbjct 45460 CTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 45403 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || || Sbjct 45402 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTATGGAGAGGAA 45344 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || ||||| |||| | |||| | |||||| | || |||| | || | || Sbjct 45343 TTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGCAAGAC-AATCAAGGC 45285 Query 97172 ACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | |||| || ||| ||| ||| ||||| |||| || | ||| Sbjct 45284 TC-AGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 45227 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 45226 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 45167 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||||| |||||| | |||||| |||| |||||| Sbjct 45166 TCCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAG 45122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050779714840