Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq823 113 7e-21 seq124 107 3e-19 >seq823 Length=172560 Score = 113 bits (124), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 13895 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 13837 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 13836 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 13796 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | |||| |||||| || || |||| ||| | Sbjct 13733 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTTCCTTGAGGGTGTCATCCGTGACG 13674 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || || |||||||| || || ||||||||||| ||| | || ||||||| | Sbjct 13673 CTGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACATCCCTCGACGTCGTCTACG 13614 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || || |||| | || ||||| || ||||| Sbjct 13613 CTCTCAAGCGACAGGGACGTACCCTCTACGGTTTCGGTGGTTAA 13570 >seq124 Length=493251 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 14292 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 14234 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| | |||| Sbjct 14233 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATTTCTG 14193 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | |||| |||||| || ||| || | ||| | Sbjct 14135 TGATCTACGAGGAGACCCGCGGTGTCCTTAAGACATTCCTCGAGGGCGTCATTCGTGACG 14076 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || |||||||||||| || || || ||||| ||||| || | ||| | ||||| | Sbjct 14075 CCGTCACCTATACCGAGCATGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 14016 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || |||||||| | |||| ||||| || ||||| Sbjct 14015 CCCTGAAGCGACAAGGCCGCACCCTTTACGGTTTCGGTGGTTAA 13972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074368894937