Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq59 178 2e-39 seq279 141 1e-28 >seq59 Length=53314 Score = 178 bits (196), Expect = 2e-39 Identities = 620/958 (65%), Gaps = 16/958 (2%) Strand=Plus/Plus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 45098 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 45157 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 ||| || | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 45158 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 45217 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 45218 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 45276 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATAC 63131 | || ||||||| ||| | ||| | |||| | || ||| | | ||| Sbjct 45277 GCTTCTGAGCCTTGATTGTC---TTGCGAC-CCTTGCCCTCCTTCTCGAACTTTTCGTAC 45332 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 | ||||| || ||||| | | | | | ||||| || || | || |||||| Sbjct 45333 AGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATC 45392 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | | ||| || |||| | | || || ||||| || |||||||| |||||||| || Sbjct 45393 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCA 45452 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | || ||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 45453 AGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAA 45512 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 45513 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTG 45572 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 45573 CCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCA 45632 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTG 63489 || ||| |||| |||||||||| ||| || ||| | ||||||||| | | ||| Sbjct 45633 TTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT- 45691 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 |||||| || || || ||||| || ||||| | || || || | || || |||| Sbjct 45692 -TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 45750 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | ||||| || || || || |||| | || | || || |||| |||| | || Sbjct 45751 TTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 45810 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 || || ||||| || | || || ||||| ||||| || | || ||| | |||| Sbjct 45811 GGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGAT 45870 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63728 |||| ||||| | || || ||||| || || | || || | |||||||| Sbjct 45871 TGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATG 45929 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | |||||||||||| | || | ||||| || || || | | ||| ||| ||| Sbjct 45930 ATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCC 45989 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 ||||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 45990 AAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 46047 >seq279 Length=355525 Score = 141 bits (156), Expect = 1e-28 Identities = 360/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | | || || |||||||| || || || || ||||| || || Sbjct 82966 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 82907 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || ||||| ||||| | ||| |||||||| || || || || Sbjct 82906 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 82847 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33493 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 82846 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 82788 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 82787 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 82728 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | || || | || || ||||| | || || | || |||||||||| Sbjct 82727 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 82668 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 82667 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 82608 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 82607 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 82548 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 82547 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 82488 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 82487 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 82428 Query 33851 AGAT 33854 | || Sbjct 82427 AAAT 82424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622940121762440