Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq279 170 2e-37 >seq279 Length=355525 Score = 170 bits (188), Expect = 2e-37 Identities = 376/559 (67%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 82981 GCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAG 82922 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || || |||| || || Sbjct 82921 ACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAA 82862 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || ||||| || || | ||| | |||||| | | ||| | || Sbjct 82861 GATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTA-TCCT 82803 Query 93271 -GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||| | ||||| || || || || || || || | || || || |||| Sbjct 82802 GGATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 82743 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || || ||||| | | | || |||||||| ||||| | || || || Sbjct 82742 TGAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGG 82683 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || ||||| | |||||||| || ||||| |||||||| || | ||| || | || Sbjct 82682 TCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGA 82623 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| || || | |||| ||| ||||| || || ||||| |||||||| || || | Sbjct 82622 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAG 82563 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGC--TTATCCC 93566 | || ||||| | || || | ||| | ||||||| | ||| || || | || Sbjct 82562 CGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCC 82503 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| ||||| || || ||||| | || || ||||||| || || || || || | Sbjct 82502 AGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 82443 Query 93627 TTTTGTACATATCCCATAT 93645 | |||||||| | ||| || Sbjct 82442 TCTTGTACATTTGCCAAAT 82424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854472669160