Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17]
909 sequences; 42,540,497 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq279 134 3e-26
seq112 107 4e-18
seq323 98.7 2e-15
>seq279
Length=355525
Score = 134 bits (148), Expect = 3e-26
Identities = 385/586 (66%), Gaps = 17/586 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 83247 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 83188
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | |||||| || || | || || || || || ||||| |
Sbjct 83187 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 83128
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|| || ||| || |||||||||||||| | | ||| |||| || || ||
Sbjct 83127 TATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGA 83068
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGA- 251796
|| |||| || ||| || || || | || ||| ||| ||| ||| |
Sbjct 83067 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTTGCTGGCA 83008
Query 251797 -GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855
||| |||| || | |||| ||||| | |||| | ||| ||||||||
Sbjct 83007 CGACC-CTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 82955
Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915
||| ||| ||||| ||||||||| | | ||| |||||||| | ||||| ||| ||||
Sbjct 82954 GTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCTTGAG 82895
Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975
||||||||| | | |||| ||| ||| | | |||||| ||| | | |||||
Sbjct 82894 CCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAGGCAAC 82835
Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032
|| |||| ||||| || ||||| | || | || | ||||| | |||||
Sbjct 82834 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCAGCCTT 82775
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||||| | ||| || || || || || | |||||| || | |||| ||| ||
Sbjct 82774 CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGGGCGGGCTC 82715
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
|| |||| | || | ||||| ||||| |||| ||||| |||
Sbjct 82714 CTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATG 82669
>seq112
Length=1295162
Score = 107 bits (118), Expect = 4e-18
Identities = 161/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 237907 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 237848
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| |||||||||| | || || ||||| ||||||||| || |
Sbjct 237847 CAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 237788
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | || || || ||||| |||
Sbjct 237787 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 237729
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 237728 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 237683
Score = 87.8 bits (96), Expect = 4e-12
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| || ||| ||||| |||| | | ||
Sbjct 236505 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 236446
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | ||||| | ||||| || |||||||||||||||||||| |||||
Sbjct 236445 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 236387
Query 280821 GA 280822
||
Sbjct 236386 GA 236385
>seq323
Length=329654
Score = 98.7 bits (108), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| ||||| || || || |||||||||||||||||||| || | || || || || |
Sbjct 24351 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 24410
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||||||||| ||||| || || || || || || ||||| | || ||||| | ||
Sbjct 24411 GCGTGCCGACGTCCTCCTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 24470
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
|||||| | | |||||| | ||||| | || | | |||||||| ||||||
Sbjct 24471 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 24528
Query 279873 GACTCTGGCTTCCTAGA 279889
||||| || ||||| ||
Sbjct 24529 GACTCCGGATTCCTGGA 24545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027824829234469
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |