Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq279 383 3e-101 seq59 304 2e-77 >seq279 Length=355525 Score = 383 bits (424), Expect = 3e-101 Identities = 602/847 (71%), Gaps = 20/847 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 82433 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 82492 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || || ||| | || |||| || || |||| | Sbjct 82493 CTCCACGACTGGAA--CAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCTCACATCC 82550 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 82551 TTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGATTCAGTG 82610 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | |||||| || |||||||||||||||||||| || |||||| Sbjct 82611 GCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 82670 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 82671 TTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGCCCAGCGAA 82730 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 82731 CCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 82790 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | ||| | | || | | || | || || |||||| | || | Sbjct 82791 TCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTG 82850 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | ||||| ||||||||| || ||||||||||||||||||||||||||| || ||| Sbjct 82851 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTC 82910 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || || ||||| ||||| |||||| | |||||||| || || | Sbjct 82911 TC-ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 82969 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | ||| | ||| || | | Sbjct 82970 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGATGAT 83025 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || |||||||| || ||||| || ||| ||||||| ||||| | | || || Sbjct 83026 CCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCACCGAAGCTCTTCC 83085 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGTCGCC 43019 | ||| |||| ||||||||||| ||||||||| |||| ||||| ||| |||||| Sbjct 83086 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAA-TACATTGAGTTCGTCGCT 83143 Query 43020 GACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 || | ||||| ||| | ||| || | ||||||| | | ||||||||| Sbjct 83144 GATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGA 83202 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 ||| |||||||||||||| | | |||||||||||||| ||||||||||| || ||||| Sbjct 83203 CTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGA 83262 Query 43139 CTACCAG 43145 ||||||| Sbjct 83263 CTACCAG 83269 >seq59 Length=53314 Score = 304 bits (336), Expect = 2e-77 Identities = 887/1344 (66%), Gaps = 43/1344 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| ||| | || || Sbjct 44525 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGG 44584 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 44585 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 44644 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 44645 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 44695 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-G 244327 || ||| |||||||| | | |||| | ||||||||||||||| || | |||| | Sbjct 44696 CCAATCCC-AGAGGTCCGAGGGCTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAG 44754 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 || |||| |||| | |||| | ||||||||| || || ||||||| || | Sbjct 44755 ATG-CGGGAGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG 44813 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || |||||| |||| || ||||||||||||||| |||||| | || || |||| Sbjct 44814 GCAGT-GAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTC 44872 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | |||||| || | || | ||| | ||||| || || || || || | Sbjct 44873 GGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAG 44932 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 || || |||| ||| ||| |||| | || | || | || || ||||| ||| Sbjct 44933 ACCAATAGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCA 44991 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGA 244624 | ||||| | |||||| |||||||| | | || | ||| ||| | | |||| || Sbjct 44992 CATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAGCTTCTTG 45050 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| | | | || ||| | || ||| | | | || | || Sbjct 45051 AAGTCGTA---GCAAGCTTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA-- 45100 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||| ||||||||||| || ||||| || | ||||| || ||| || ||||| Sbjct 45101 --GGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAA 45158 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| || |||| || || ||| |||| ||||||||| ||| Sbjct 45159 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 45218 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 |||||||||||||| || |||||||| |||||| | || | | || ||| || Sbjct 45219 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGC 45278 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | |||||||| ||| ||||| |||||||||| |||| | |||||| ||| Sbjct 45279 TTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCC 45338 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 ||||| || || || ||| | ||||| |||||| |||||||| || || Sbjct 45339 TCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTC 45398 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | | || | || |||||| || || |||||||| ||||| |||| Sbjct 45399 CAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA 45458 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || || | || | ||| ||| ||| |||||| | || || | || || ||| Sbjct 45459 AGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAATCGAAG 45518 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || || |||||| ||||| | ||||| || | || || || ||||||||||| ||| Sbjct 45519 ACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCCACCC 45578 Query 245165 TGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 ||||| | ||| | ||||| |||||||| || || |||| || | || || Sbjct 45579 TGGTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 45634 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGC-CCCTGAGGTTGCTGATGGAC 245278 || |||||||| || |||||| | ||| | || | | | ||| || | Sbjct 45635 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAG 45694 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | || || || ||||||||| | ||| ||| |||||| || || || Sbjct 45695 A--CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATT 45752 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 45753 CCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGG 45812 Query 245399 CTGCACGAGTTGAACAGAGTGGGG 245422 ||| | ||||| ||||||||| Sbjct 45813 GTGCCGGCATTGAAGAGAGTGGGG 45836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328469945840