Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq279 109 1e-18 seq112 93.3 9e-14 >seq279 Length=355525 Score = 109 bits (120), Expect = 1e-18 Identities = 297/444 (67%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCG-GGA 243343 || ||||| |||||||||| |||| | ||| ||||| ||||| || | ||| | || Sbjct 82817 TCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGTGGT 82873 Query 243344 GT-TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 | ||| | ||||||| ||||| ||| ||| | |||||||| || | | || Sbjct 82874 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCC 82933 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| ||||| ||| |||||||| |||||| | || | || | | || Sbjct 82934 AACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCT 82993 Query 243463 AAGCTCCAGAA-CAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | ||| || | || | || | | | | || | | |||||||| || || || Sbjct 82994 CACCTCAAGGGTCGTGCCAGCAAGC-AGATGATCCAGGATATCATCACTGATGCCGTCAC 83052 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | || |||| || | ||| ||| |||| || || | |||||||||||||| Sbjct 83053 CATTGAGCAGGAGTTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGA 83112 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| || ||||| || ||||| || || || | | |||| ||||| | || Sbjct 83113 CCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGA 83172 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| || ||||| ||| |||||||| | ||| |||||| ||| || ||| || || Sbjct 83173 GAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAA 83232 Query 243702 AACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 83233 GACCAACTTCTTCGAGAAGCGTGT 83256 >seq112 Length=1295162 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACA-TCCGCAGAGGGGAACCCTTCAA 334194 ||| || ||||| || ||| | |||| || | | || || |||| |||||| ||| Sbjct 237689 GTCAAGGTCGTGCTCGACGAAGACAGTCTTGACCTCGCTCTGCTTAGGGAAACCCT-CAA 237747 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 ||| |||| || |||||||| ||||| || || || | ||||| || || || | Sbjct 237748 CCTGCTCGTTGTTGATGGCGCGCATGAGAGTGGACTTTCCGGAACCGTTGGGACCGCAAA 237807 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||| || | |||||||| ||| || | || | ||| |||||||| || ||| Sbjct 237808 GACCGTAACGCTGACCACGCTTGAGACGGAGATGGGTCTGGTTGAGAAGAATCTTGGCAC 237867 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | || || ||||| || ||| | || ||||||||||| Sbjct 237868 CGTAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACC 237907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867155239150