Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq224 107 2e-18 seq13 100 3e-16 >seq224 Length=426345 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 275074 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 275133 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 275134 AAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 275193 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 275194 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 275253 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 275254 ACGAAAATCTGCAT 275267 >seq13 Length=660952 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || || || || || || || | Sbjct 443022 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAGCTGCTTGCCAG 443081 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || |||||||| ||||| || ||||| ||| | || | || Sbjct 443082 CGAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 443140 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | || || ||||| | || | || || ||||| ||||| Sbjct 443141 ACGTTG-TCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGT 443199 Query 138597 TTTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 443200 CTTCACGAAAATCTGCAT 443217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||||||||||||| | || || ||| || ||||| || || | | Sbjct 443480 GATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCA 443539 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | ||| Sbjct 443540 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTAAC 443598 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | || |||| |||||| ||||| | || | || || ||||| || || | Sbjct 443599 ATTG-TCGATAGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 443657 Query 138599 TTAC 138602 | || Sbjct 443658 TGAC 443661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256761218480