Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq59 161 1e-34 seq279 152 6e-32 seq135 82.4 9e-11 >seq59 Length=53314 Score = 161 bits (178), Expect = 1e-34 Identities = 1163/1851 (63%), Gaps = 61/1851 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 44188 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 44247 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| | | ||||| || | |||| | || || | |||| Sbjct 44248 CAAGCTTCCAGCCTGCGAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGT 44307 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||||| ||||| ||||| ||||| || |||||||| ||||| | || | Sbjct 44308 GGATGTTCAGTGACTGGGACTGATCAATGAATGCACCTCGATCCGCAGCCATCTGAACGA 44367 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | | | ||| ||||| ||||| |||| || ||| | || | ||||| | Sbjct 44368 CCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGT 44427 Query 115766 CCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822 || || || || || ||| | || ||| || | | ||||||| | | | Sbjct 44428 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 44484 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878 |||| ||||| || | || |||| | | ||| | |||||||| ||| Sbjct 44485 ACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAAC 44540 Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 ||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| ||| Sbjct 44541 TCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTG 44600 Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998 || |||| || |||| || ||| || ||||| || || | ||| || ||||| ||| Sbjct 44601 TTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGG 44660 Query 115999 AGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTCT 116056 | || | | | | | | || || | | ||||| || || | | | || Sbjct 44661 ATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCCGAGGGCT 44718 Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116 | | |||||| ||||||||||||||||| | || || || || |||| || || Sbjct 44719 TGACGTTCCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGG 44778 Query 116117 CATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 || || ||||| ||| |||| | ||||| || |||||| |||||||| | Sbjct 44779 AGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAA 44835 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 | ||||| || || | || | | |||||| || || || | | ||| | Sbjct 44836 TGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-C 44894 Query 116234 ACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || |||| || || ||||| ||||| || ||||| || || || | ||| Sbjct 44895 AGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATG 44954 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 44955 TTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTG 45014 Query 116353 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 116412 | ||||||| ||| | || ||||| | | | || | || || ||||| Sbjct 45015 CGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCA 45068 Query 116413 TTG-ACATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 | | | | | | | ||||| | || || || || || |||| | ||| || Sbjct 45069 TCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCA 45128 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | || |||||| |||||||| || || | || || || ||||| || | |||| Sbjct 45129 GGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTC 45188 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 ||||| || ||| ||| || ||||||||||||||||| |||| | || ||||| Sbjct 45189 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 45248 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG---C 116642 || |||| || ||||| || | ||| | | || | | || | | || | | | | Sbjct 45249 GTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCC 45305 Query 116643 TCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTG 116701 | | ||||||| |||| ||||| ||| || ||||| || || || ||| ||| || | Sbjct 45306 TTG-CCCTCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTCGG 45363 Query 116702 AGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCT 116761 ||| || || || | || || | || | ||| | ||| || ||||| |||| Sbjct 45364 CGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCT 45423 Query 116762 TCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCAT 116821 ||||||| || || |||||||| || || ||| ||||| || || | || || | Sbjct 45424 TCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCT 45483 Query 116822 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 116881 || || || ||| | || | || || | || ||| | |||||| || || |||| Sbjct 45484 TACCATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGT 45543 Query 116882 ACACCGCGATTGACCCCTTG-CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 | | || | | | ||| | || ||| |||||| ||||||| || || | Sbjct 45544 AGATGGCAAAAG-CACCTGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTG 45602 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATAC 116995 || || || |||||||| |||| | ||||| ||| || || || || ||| || Sbjct 45603 TTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTAT 45662 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| | | || | | | ||| | | | ||| ||||| || ||| ||| |||| Sbjct 45663 GAGCC--AGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGA 45720 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || || | ||||| | ||||||| || || || ||| |||| | | | Sbjct 45721 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAA 45780 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 | |||||| |||| ||| ||| || || || || |||||||| || || | | Sbjct 45781 CCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAG 45840 Query 117176 CGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 | || ||| | | |||| |||||| || ||| ||||||||||| || || Sbjct 45841 CATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATC 45898 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGAT 117293 || || ||||| | || || ||||| | ||||| || || || || | | Sbjct 45899 ATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTT 45958 Query 117294 ACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 ||| || | | | ||||||| |||||| ||||||| ||||| || Sbjct 45959 ACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 46009 >seq279 Length=355525 Score = 152 bits (168), Expect = 6e-32 Identities = 311/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 83266 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 83207 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| |||| ||| Sbjct 83206 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 83152 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||| | ||| ||||||||||| |||| |||| Sbjct 83151 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 83092 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || ||| ||| ||||||| || || || | ||| Sbjct 83091 GCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 83032 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 83031 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 82975 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || ||||| |||||| ||| Sbjct 82974 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGC 82915 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 82914 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCC 82855 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || ||| || || |||| ||||||| |||||||||| Sbjct 82854 TCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 82816 >seq135 Length=460123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 177742 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 177801 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 242309 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 242368 Query 177802 TGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGGATTCCAAATACCCTCCTTTTCGTG 177861 | || || | || || |||||| |||| || ||| | | || |||||||||||| Sbjct 242369 GGAACCCGCCAACAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 242428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500229024440