Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq279 176 7e-39 >seq279 Length=355525 Score = 176 bits (194), Expect = 7e-39 Identities = 366/540 (68%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | ||| ||||||||| |||||||||||||| | | ||| || Sbjct 83272 CTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTT 83213 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | | | ||| |||| || ||||| | || Sbjct 83212 CTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAG 83153 Query 159748 CAACCTGTCTGCCACAAATTCGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGC 159805 | | || || || || || ||||| ||| || | | ||| |||| || || || Sbjct 83152 GAGACGATCAGCGACGAACTCAATGTATTGCTTCA--TGAGGTCAGAGTTCATGCCGAGG 83095 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 || | ||| || ||||| | |||||||||| |||||| ||| || || || | Sbjct 83094 AGGGCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATG 83035 Query 159866 ATCTGCGAGA-CACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCA 159924 || | | || || | | | | ||| | || || ||| |||||||| Sbjct 83034 ATATCCTGGATCATCTGCTTGCT--GGCACGACCCT--TGAGGTGAGAGTGGAGGAGGCA 82979 Query 159925 CGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCC 159984 |||||||| ||| || |||||||| |||||||||| ||||||||| | | || || Sbjct 82978 GGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACC 82919 Query 159985 CGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGAT 160044 ||||||| |||||| |||||||| || |||| || || ||||| || || ||||| Sbjct 82918 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGAT 82859 Query 160045 CCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT 160104 ||||| || || ||||| || ||||| | || |||| |||| || | || ||| | Sbjct 82858 ACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGAT 82799 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 ||| | ||||||| |||||||||||| |||||| || ||| ||| | |||||| || Sbjct 82798 CCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAA 82739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146165049040