Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq59 228 1e-54 seq32 107 2e-18 seq168 89.7 6e-13 >seq59 Length=53314 Score = 228 bits (252), Expect = 1e-54 Identities = 1026/1601 (64%), Gaps = 61/1601 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| |||||| ||| ||||| || ||||| | | || Sbjct 44312 GTTCAGTGACTGGGACTGATCAATGAATGCACCTCGATCCGCAGCCATCTGAACGA---- 44367 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 | | ||| | | ||||||||||||||||||| | ||||| || | || |||| Sbjct 44368 CCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGT 44427 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 44428 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 44484 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 44485 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 44541 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || || || ||||||| || | |||||||| ||||| ||||| |||| Sbjct 44542 CACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 44601 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 44602 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 44661 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | |||||||| | | | | | | Sbjct 44662 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTC-CGAG-----G 44715 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || |||||||||||||| Sbjct 44716 GCTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGG 44775 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || ||||| Sbjct 44776 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAA 44834 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || ||||| || || || || |||| |||| ||| | |||||||| | | Sbjct 44835 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATA 44891 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || || |||| || || || |||||||| |||||||| || || || Sbjct 44892 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCG 44950 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 44951 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 45010 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || ||| | || || || | | | ||| | | | || Sbjct 45011 GTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA-GCAAGCTTCAT 45069 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| |||| | ||| ||||| ||||| |||| |||||| Sbjct 45070 CGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 45129 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | ||| || | |||||| || || | |||||| || ||| ||| | ||||| Sbjct 45130 GAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 45189 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 45190 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 45249 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA 110500 |||| | || |||||||| | ||| | | || | | | | | || |||| | | Sbjct 45250 TCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG-ATTGTCTTGCG--ACCCT 45306 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 || |||| |||| |||| ||||| |||| ||||||| ||| || || | | Sbjct 45307 TGCCCTCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGA 45366 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || ||| || | || | ||| | || || ||||| | ||||| Sbjct 45367 GGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCA 45426 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || ||||| ||||| | || |||||| |||||| ||| |||| || | || Sbjct 45427 TGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTAC 45486 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || || || | || || | || ||| |||||||| || ||||| |||| Sbjct 45487 CATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 45546 Query 110741 CAGCGA-------TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 || | ||| || ||| | |||| |||| ||||| || || ||| Sbjct 45547 TGGCAAAAGCACCTGG-TCGCTTGTTGCCACCC---TGGTCGACATACCGAGCAGTGTTG 45602 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 |||||||| | |||||||||| || |||| ||| ||| || ||||| || Sbjct 45603 TTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTAT 45662 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 || | | |||||||| ||| | || | ||| |||||||| ||| ||| || Sbjct 45663 GAGCCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATC 45722 Query 110914 TGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||| ||| |||| ||| | || || || ||||| || |||| | ||| Sbjct 45723 ATGGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAAC 45781 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 | |||||||| |||| || || |||| || || ||||||||||| || || | || Sbjct 45782 CAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGC 45841 Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 ||| ||| ||| |||| |||||| |||||||| || Sbjct 45842 ATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTC 45880 >seq32 Length=83943 Score = 107 bits (118), Expect = 2e-18 Identities = 251/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 13341 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 13283 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || ||||||||||| || ||||| | Sbjct 13282 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAAGA 13223 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| || ||| | Sbjct 13222 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGACGGTCCGA 13163 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 13162 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 13105 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || ||||| || || | |||||||| |||||||| | ||||| | | Sbjct 13104 CTCGCCGGCTGTGGCTTTGGCAAGCAATGTCTTACCAGTACCAGGGGGGCCAGCTAAGAT 13045 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 13044 AGCACCTCGAGGGATCTTGGCACCCAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 12988 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 12987 GCTCACAAACTCC 12975 >seq168 Length=443820 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 169822 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 169881 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 169882 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 169941 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 169942 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 169993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969307760200