Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq59 201 1e-46 seq279 113 5e-20 seq2 98.7 1e-15 seq168 91.5 2e-13 >seq59 Length=53314 Score = 201 bits (222), Expect = 1e-46 Identities = 1135/1784 (64%), Gaps = 59/1784 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| |||||| Sbjct 44181 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 44240 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || | | | |||||| | || |||| |||||| || Sbjct 44241 TTGAGGCCAAGCTTCCA-GCCTGCGAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 44299 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 | |||| | |||| ||| |||| | |||||||| ||| || | || ||| Sbjct 44300 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAATGCACCTCGATCCGCAGCC 44357 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || ||| ||| ||||| || Sbjct 44358 ATCTGAACGACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCG 44417 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 44418 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 44474 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 44475 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 44534 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | | | ||||| || | |||||||| || ||||| Sbjct 44535 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 44594 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 44595 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 44654 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTGAGC 106081 ||||| | || | | ||||| ||||| ||| | ||||| || || | | Sbjct 44655 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCC 44711 Query 106082 TTGGT-TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTC 106140 || || || |||| |||| ||||| || || | || | || | ||||||||||| Sbjct 44712 GAGGGCTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTT 44770 Query 106141 AAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 106199 || || |||| ||| | | | ||||| | ||| | || |||| |||| Sbjct 44771 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGT 44829 Query 106200 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 106259 |||| ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 44830 GATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-GC 44888 Query 106260 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 106318 | ||| | || || |||| || || ||||||||||| | ||||||||||| ||| Sbjct 44889 ATACGCAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGG 44948 Query 106319 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 106378 ||||| ||| || || || || || || || || || |||| ||| Sbjct 44949 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 45008 Query 106379 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438 || || |||||| || ||| | || || || | | || | || || Sbjct 45009 AGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAGCT 45065 Query 106439 TCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 106495 || || | ||| | || || | | || || | ||||| ||||| ||| Sbjct 45066 TCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCG 45125 Query 106496 TCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAA 106555 || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 45126 TCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGG 45185 Query 106556 TTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 106615 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || ||| Sbjct 45186 TTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTC 45245 Query 106616 TCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGC 106674 || ||||| | || ||||| || | ||| | | || | | || | | || | | | Sbjct 45246 TCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGA 45302 Query 106675 CCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 106731 || | |||||| |||| ||||| ||| || || || || ||||| ||| || ||| Sbjct 45303 CCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTC 45361 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCG 106791 || ||| || || || || || || | || | ||| | ||| || ||||| || Sbjct 45362 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACG 45421 Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCT 106849 |||||||||||| || || ||||| |||| | | ||| ||||| | ||| || |||| Sbjct 45422 CTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTCC 45479 Query 106850 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 106909 || | ||| ||||| || | |||||||| || | || ||| | |||||| ||||| Sbjct 45480 TCCTTACCATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCG 45539 Query 106910 AGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCT 106963 || |||| || | || || | | ||| ||| | || | ||||| || || Sbjct 45540 AGGTAGATGGCAAAAGCACC---TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCA 45596 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCG 107022 ||| ||| || || |||||||| |||| || ||||| ||| ||| || || || || Sbjct 45597 GTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCG 45656 Query 107023 A-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 107081 | || ||| | | || | | | || | | | || ||||| |||||| || Sbjct 45657 ATGTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCT 45714 Query 107082 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 107141 | ||||| ||||| | | ||||| | ||||| || | || ||| ||||| Sbjct 45715 TGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCA 45774 Query 107142 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 107201 | | | | ||||||| |||| || || || || || ||||||||||| || | Sbjct 45775 TATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGG 45834 Query 107202 GTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATC 107259 | | || || ||| | | |||| |||||| | ||||||||||||||| || Sbjct 45835 GGGAAGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTC 45892 Query 107260 AATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || || ||| || | | ||||||||| | ||||| Sbjct 45893 GATATCATCACCCCAGATACCAACAGACACACGCATGATCATGT 45936 >seq279 Length=355525 Score = 113 bits (124), Expect = 5e-20 Identities = 330/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 83265 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 83206 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | || || | | | | || |||| |||| Sbjct 83205 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 83151 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 ||||||| | || |||||||||| | ||| ||||||||||| |||| ||| Sbjct 83150 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 83091 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||| || || || || || ||| | | |||||| || || || | | ||| Sbjct 83090 CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 83031 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 83030 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 82974 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| |||||||| || || || || || || || ||||| || || |||| Sbjct 82973 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 82914 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| | || | | ||| | || |||||||||||||| Sbjct 82913 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 82854 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCAT 117456 | ||| ||||| |||| || |||| ||| |||||| ||| | || | | | |||| Sbjct 82853 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 82795 Query 117457 TTCATTGCCCATTTCGCCTTCTT 117479 || ||||| | |||||||| Sbjct 82794 CGGATGGCCCAGTCAGCCTTCTT 82772 >seq2 Length=677019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGA 9420 ||| | |||||||| || || ||||| ||||| || || ||| |||| || | | Sbjct 331049 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCCGCAGT 331108 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||||| || || || | ||||| || ||||||||||| ||||| |||| | | Sbjct 331109 G----AAGAGGTCACGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 331163 Query 9481 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 331164 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 331223 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTT 9599 |||||||| ||||| || ||| | |||||| ||||| || | || || ||| Sbjct 331224 GTCTTACCAGTACCAGGAGGACCGACTAGGAGGACACCCTTAGGCAGTTTAGCACCAAGA 331283 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 9659 | | | | || || | ||| ||||| || |||| |||| | || |||||||| Sbjct 331284 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 331343 Query 9660 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 9691 ||||| || | ||||||| | ||||| || Sbjct 331344 TCGTCACAACCATGAACATCGTTGAACCGAGT 331375 >seq168 Length=443820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 169822 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 169881 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 169882 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 169941 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 169942 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 169994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974096343160