Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 6e-16 >seq13 Length=660952 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||||||| || || || || Sbjct 443027 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 443085 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 443086 GATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 443145 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || || || || | ||| ||||| ||||| |||||||||||||| Sbjct 443146 GTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTCAC 443205 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 443206 GAAAATCTGCATA 443218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 443765 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 443824 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| |||||| |||||| Sbjct 443825 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 443884 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 443885 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACG 443944 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 443945 AAGATCTGCAT 443955 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| | |||| |||| | || || || || ||||| ||||| Sbjct 443482 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 443541 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||||| || || | Sbjct 443542 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAAC--A 443599 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | |||||| || | ||| ||||| || || ||||| |||| Sbjct 443600 T--TGTCGATAGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 443657 Query 34966 TCAC 34969 | || Sbjct 443658 TGAC 443661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630003566952