Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq279 100 3e-16 >seq279 Length=355525 Score = 100 bits (110), Expect = 3e-16 Identities = 359/558 (64%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || || |||||||| | | || | || || || || || | | Sbjct 82980 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 82921 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || || | |||||| || || || || | ||| ||||| Sbjct 82920 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAG 82861 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TCATTATTATG 19139 ||||| || || || ||||| ||||| || | | || || || | || |||| || Sbjct 82860 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCA-AAGGAGGAGTCCTTATCCTG 82802 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | ||||| |||||||||||| | || || || ||||| || | || Sbjct 82801 GATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 82742 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||||| | |||| | | || || | |||| || || | | ||| | Sbjct 82741 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGT 82682 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || |||||||| || || || ||||| || ||||| || || | || || | || Sbjct 82681 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 82622 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | || |||| ||||| | || || || || || |||||| || || Sbjct 82621 CTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 82562 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---ATGTATTCCA 19436 || || || | | || | ||| | ||||| | |||| | ||||| Sbjct 82561 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 82502 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | | ||| || || | ||| | || ||| | ||||| || |||||||| || || Sbjct 82501 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 82442 Query 19497 TTTATACATGTTCCATAT 19514 || ||||| | ||| || Sbjct 82441 CTTGTACATTTGCCAAAT 82424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102413038760