Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq59 349 6e-91 seq279 197 3e-45 >seq59 Length=53314 Score = 349 bits (386), Expect = 6e-91 Identities = 1230/1888 (65%), Gaps = 100/1888 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||||||||| Sbjct 44184 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTG 44243 Query 212613 AGGCC---CTTGCCCCAGCCGTGC-ATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| ||| | |||||| |||| |||| | || | Sbjct 44244 AGGCCAAGCTT---CCAGCC-TGCGAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 44293 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||||| | Sbjct 44294 GGGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAATGCACC 44344 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | || || ||||| | | || | | ||| |||| |||||| || |||||| | | Sbjct 44345 TCGATCCGCAGCCATCTGAACGACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAG 44404 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| ||| | |||| | ||| |||||||| | || || || |||| Sbjct 44405 AGCCTTGACGTCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 44457 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 44458 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 44516 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | || || Sbjct 44517 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAG 44576 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 44577 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 44636 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 44637 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 44693 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||| ||||| |||||| | ||| |||||||||||||||||||| | Sbjct 44694 T-CCCAATCCCAG---------AGGTCCGAGGGCTTGACGTTCCACATGTCAAACTGGAG 44743 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| |||| |||| | | | ||||||||| || | |||||| | Sbjct 44744 GATACC----CTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 44799 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| || ||||| || || |||| | ||||| Sbjct 44800 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTG 44858 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 44859 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCAAGG 44918 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || || | || || |||| ||| | || |||| ||| |||| ||||| | Sbjct 44919 CCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 44977 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| |||||||| | | || | |||| | Sbjct 44978 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 45037 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT-GCACAAACTCAGGCAGGGC-G 213488 | ||| | || |||| |||||| | || | | | | | | ||||| | Sbjct 45038 GTGCAGCTTCT------TGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAG 45091 Query 213489 ATGCTG----GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 | | | || |||||||| || || ||||| | || | |||||| || || || Sbjct 45092 AGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTC 45151 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 ||||| |||||| || ||||||||| || ||||||| ||||| ||| ||| | || Sbjct 45152 AGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTT-GCGGTTGC 45210 Query 213605 AGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 || |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 45211 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 45270 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||| ||| || Sbjct 45271 ACCAAAGCTTCTGAGCCTTGATTGTCTTGC-GACCCTTGCCCTCCTT--CTCGAACTTTT 45327 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | |||||| | || || | | || || || || ||| | Sbjct 45328 CGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 45387 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 45388 ACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 45447 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | || ||| || || | || | ||| ||| ||| ||| || || ||||| | Sbjct 45448 GGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAA 45507 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 45508 GGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCT 45567 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCA 214020 | ||||| |||||||| || || || ||||||||| || || | || || | Sbjct 45568 TGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 45627 Query 214021 GCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGC 214077 || || || ||| |||||||| || || || || ||||| | || | | | ||| Sbjct 45628 CACCATTCGA-TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGC 45686 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 ||| ||| || || ||||| || ||||||||||||||| ||| | | | ||| | Sbjct 45687 ACATTTAGA--CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTAT 45744 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||| || | || ||||| || | | | | ||||||||| || | |||| Sbjct 45745 CGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGG 45804 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 || | | ||| | ||||| || |||||| ||||| | | |||||| |||| | Sbjct 45805 GCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACA 45864 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAG-CGCAC 214316 || |||| ||||||| |||| ||| || | ||| | || | || Sbjct 45865 TCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACA- 45923 Query 214317 CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGTAGG 214374 | ||| | ||||||||| || | ||| || ||| | | |||||| ||||| | Sbjct 45924 CGCATGATCATGTGCTGAGGGCGCTCGAT--AATCTTACCGTCAATCTTGAGGAGGTATG 45981 Query 214375 AGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 | ||||||| ||||||||| |||||||| Sbjct 45982 ATCGCTCCAAAGTCTTGAAGCCAAAGTA 46009 >seq279 Length=355525 Score = 197 bits (218), Expect = 3e-45 Identities = 490/735 (67%), Gaps = 23/735 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 83269 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 83210 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | || | | Sbjct 83209 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCGTTGCCAAGAGCGACAAGGA 83151 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||||| ||||||| ||||||||| | ||||| Sbjct 83150 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 83091 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||| | ||||||||||||| ||| || ||||| || | || Sbjct 83090 -CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 83032 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 83031 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 82983 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || ||||| || ||||||| |||||||||| | Sbjct 82982 GGCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCA 82923 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||||||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 82922 GACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGA 82863 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || || || || ||| | || | || || | || ||| || Sbjct 82862 AGATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 82803 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 82802 GGATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 82743 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | | | || | | ||| | || || || || | ||| Sbjct 82742 TGAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGG 82683 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| || || | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 82682 TCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGA 82623 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || ||||| ||| | || ||||| ||||| || ||||| || |||| Sbjct 82622 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAG 82563 Query 48549 CAAAGAAGGCAAGGA 48563 | ||||| ||||||| Sbjct 82562 CGAAGAAAGCAAGGA 82548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522215458560