Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq59 201 2e-46 seq279 199 7e-46 >seq59 Length=53314 Score = 201 bits (222), Expect = 2e-46 Identities = 718/1103 (65%), Gaps = 47/1103 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || ||||||||||| || |||||||| |||||| ||||||||| ||| | |||||||| Sbjct 44817 GTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 44875 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||||||||| | | ||||| | ||||| || || || || || | | Sbjct 44876 TGACTCGAAGGGCATACGCAG-AGCAAGGAAAG-CATCGGCAAGGCCTTGAACACCAAGA 44933 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || || | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 44934 CCAATAGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 44991 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | |||||||| | Sbjct 44992 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGA 45051 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | ||| | | ||| || || | || | | || | | Sbjct 45052 AGTCGTAG--CAAG-CTTCATCGTAGTTGATG---------AAGGAGGGCAGAGACAGAG 45099 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||| ||||| || || || |||||||| |||| || || || || || | Sbjct 45100 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAA 45159 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || |||||| || |||| || || || |||||| ||| || |||| Sbjct 45160 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 45219 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || || || ||||| ||| ||| | ||||| || ||| || | Sbjct 45220 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCT 45279 Query 221892 CTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 45280 -TCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTAC------ 45332 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | | || | || || || ||| | ||||| || ||| | ||| ||| Sbjct 45333 -AGAGCCT--CGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCAC 45389 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 ||||| |||||| ||| | || || | || |||||| || || |||||||| || Sbjct 45390 ATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGG 45449 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || ||||| | || || ||||||| || | ||| || | ||||| | Sbjct 45450 GCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGG 45509 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 || || || | |||| |||||| ||||| || |||| ||| | ||| || ||||||||| Sbjct 45510 AAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTG 45569 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||||||||| || | ||| | ||| | |||||||| ||||| | || || | Sbjct 45570 TTGCCACCCTGGTCGA-CATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 45628 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-G 222302 || || ||| ||||||||| || ||||| | || || | | ||| | | Sbjct 45629 ACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC---GAATACGGTG 45685 Query 222303 CAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 || | | ||||||||||| || || ||||||||||| ||| |||||||||| || Sbjct 45686 CACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 45745 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || | Sbjct 45746 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGG 45805 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | || | ||| || || || ||||| || || || ||| | |||||||| Sbjct 45806 CTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACAT 45865 Query 222481 CAGATCGTACGTCTCTACGACTC 222503 ||||| ||| ||||| | ||||| Sbjct 45866 CAGATTGTATGTCTCCAAGACTC 45888 >seq279 Length=355525 Score = 199 bits (220), Expect = 7e-46 Identities = 560/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || ||||||||||| Sbjct 82424 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 82483 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || ||| | || |||||| ||| || Sbjct 82484 TCCAAGGATCTCCACGACTGGAACAACCGC-CTAACTGCTGATGAGCAGTTCTTTGTCTC 82542 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || |||| | Sbjct 82543 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 82602 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | || || ||| | ||||| || |||||||| |||||||| || Sbjct 82603 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 82662 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | || || ||| || || || || || || ||||| | || Sbjct 82663 GGAGAACATTCATTCCGAGACCTACTCC---CTCCTCATCGACACATACATCAAGGAGCC 82719 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 82720 CGCCCAGCGAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 82779 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | || | | | |||| | |||| || || || Sbjct 82780 TGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGC 82839 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||||||||| ||||| ||||| ||||| ||| | || || |||||||||||||||| Sbjct 82840 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 82899 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || |||||| || ||| ||||| ||||||||||||||| | ||||||| Sbjct 82900 GAAGCGTGGTCTCATGCCTGGTCTG-ACTTTCTCCAACGAGCTCATCTCTCGTGACGAGG 82958 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC-- 26066 |||| |||| || ||||||||||| ||| || | ||| ||| | | | | Sbjct 82959 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTC---TCAC---CTCAAGGGTCGTGCCA 83012 Query 26067 TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| ||| || | |||||||| || || || || ||| ||||||||| Sbjct 83013 GCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCA 83072 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATT 26184 | ||||||||| | || ||||||| ||||||||| Sbjct 83073 CCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAAC-TCTGACCTCATGAAGCAATACATT 83131 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 |||| || || || | ||| || | || || || | |||||| | | Sbjct 83132 GAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACC 83191 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 83192 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAG 83251 Query 26305 AGGGTCGGCGACTATCA 26321 | || | |||||| || Sbjct 83252 CGTGTTGCCGACTACCA 83268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834246000960