Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq59 187 7e-42 seq279 159 1e-33 seq445 111 5e-19 seq778 107 6e-18 >seq59 Length=53314 Score = 187 bits (206), Expect = 7e-42 Identities = 577/881 (65%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||| ||||| || || |||||| || | ||||| ||||| Sbjct 45137 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 45196 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 45197 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 45256 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || ||| |||| |||| ||| Sbjct 45257 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTT 45316 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| | |||| || | ||| | | | ||||| || || || || || |||||| Sbjct 45317 CTCGAACTTTTCGTACAGAGCCTC--GAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGG 45374 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||| | ||| | || || | | |||||| ||| || Sbjct 45375 CACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 45431 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||||| ||| |||||| || | || |||||| | || || Sbjct 45432 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGG 45491 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || | ||||| || ||||| || || || ||| Sbjct 45492 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 45551 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| |||||||| || |||||||||||||| || ||||||||| Sbjct 45552 AAAGCACCTGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACA 45611 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| || |||||| || || || ||||| ||| || | || |||| Sbjct 45612 CGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 45671 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | |||| | || | || ||| || |||||||| | |||| || || || || || Sbjct 45672 GCACGAATACGGTGCACATTTAGACCGATACCACCAG-CCATCTTGGAGATCATGGCACA 45730 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279 ||| | ||||| | | || || |||||| || || | ||| | | ||| ||| Sbjct 45731 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 45789 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || ||||| || | || || || || ||||| || || || | ||||| | | Sbjct 45790 AAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGA 45849 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398 | |||| ||||||| || |||||||||| | ||| | || | |||| | Sbjct 45850 AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAG- 45908 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 |||| | ||| || | ||| ||| |||||||| ||||| | |||| || ||||| Sbjct 45909 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATC 45968 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 45969 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 46009 >seq279 Length=355525 Score = 159 bits (176), Expect = 1e-33 Identities = 248/352 (70%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || || ||| ||| || || | ||||| |||||| || || ||||| || || Sbjct 82628 GAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCATTCCGAGACCTAC 82687 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCC 133426 || || || || || |||||||| || ||| |||| | | || ||||||||| Sbjct 82688 TCCCTCCTCATCGACACATACATCAAGGAGCCCGCCCAGCGAACCTATCTCTTCAACGCC 82747 Query 133427 ATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485 ||| | || |||| || || |||||| |||||||||| || |||||||||||| Sbjct 82748 ATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGA 82806 Query 133486 CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttttt 133545 ||| | ||||| ||||||||||| ||||||| || ||||| || || || Sbjct 82807 TAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTT 82866 Query 133546 CAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTG 133605 ||||||||| ||| ||| || || ||||| || ||||||||| | | ||||| ||| Sbjct 82867 CAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAC 82926 Query 133606 TTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||| || ||||| || || || | ||||||| |||||||| || |||||| Sbjct 82927 TTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 82978 >seq445 Length=1086815 Score = 111 bits (122), Expect = 5e-19 Identities = 392/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| || ||||| | | ||||||| || | ||| | || || Sbjct 663705 ATGAGTCCACAAATCTCACAGACGTGGACACGGAAAGCATCTGACACCTCAAACAGACGC 663646 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| ||||| || ||||| Sbjct 663645 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 663586 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | | Sbjct 663585 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 663528 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 663527 GACCACGAGCCCGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 663472 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| ||| | || || | || || | |||||| || | || || Sbjct 663471 TAGGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCATTGTA 663416 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| |||||| | ||| ||| |||| | || Sbjct 663415 CATGACCTCGAAACCTCGAGATTGATAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 663361 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || || |||| || | | ||| | | Sbjct 663360 GAATC--GACTGTGACATCAGTGAACGGTGTAGCGTCACCCTCCATACCTTCCAGCGTTG 663303 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 663302 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGACGGAATGGCGT 663243 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | || ||||||||||| ||||| | || || || |||| |||||||||| | | Sbjct 663242 GAGGGTTGATGATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 663184 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 663183 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 663125 >seq778 Length=709472 Score = 107 bits (118), Expect = 6e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || |||||||||||||| ||| | || || || || Sbjct 661399 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGCA 661340 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| | |||||| |||| || |||||||| | || | || || || Sbjct 661339 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTC-GCTGGGAGTGAG 661281 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 661280 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 661221 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || | || | | || | || | || |||||||| || || || | || Sbjct 661220 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 661161 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 ||| || | || | |||| || |||||||| || || | ||||||||| || Sbjct 661160 CTGACCGACAAGCGCAGTCATTTGAGAAATATTGATAGATGA--GCCCTTGGAACC 661107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800458384333