Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq279 152 8e-31 seq3 120 5e-21 seq59 118 2e-20 seq901 107 3e-17 >seq279 Length=355525 Score = 152 bits (168), Expect = 8e-31 Identities = 236/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | |||||| |||| |||| || |||||||| || ||| Sbjct 82960 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA--CCAGGCATGAGACCACGC 82903 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||||||| ||| || ||| ||||| ||||| || || ||| Sbjct 82902 TTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 82843 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | ||||| |||| |||||| | | | ||| | | |||||| || ||| Sbjct 82842 AAGGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCC 82786 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576 || || ||||| || | | |||| | || || |||||| ||||| | ||| | Sbjct 82785 CAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCG- 82727 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | || ||||||| ||| |||||||||||||| ||||||||||| || || ||||| Sbjct 82726 CTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGTT 82667 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 82666 CTCCATCATGATCTGGAAGCCGTAGAAGCA 82637 Score = 125 bits (138), Expect = 1e-22 Identities = 185/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 83281 GACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 83222 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 83221 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 83162 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||||| ||| || || || |||||||| |||||||| || ||||||| | | |||| Sbjct 83161 AGCGAC--AAGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTC 83104 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| |||||| | ||| || |||||| Sbjct 83103 ATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCA 83044 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 83043 TCAGTGATGATAT-CCTGG 83026 >seq3 Length=126938 Score = 120 bits (132), Expect = 5e-21 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || ||||||||||| |||||| | | Sbjct 80108 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAGACCGTTGCCAACATGA 80049 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| |||||||| |||||||| || || ||||| | | ||| Sbjct 80048 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATTACGAACG 79998 >seq59 Length=53314 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || |||| || || || Sbjct 45578 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 45637 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 45638 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 45697 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 45698 GATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 45757 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 45758 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 45817 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||| ||||| Sbjct 45818 GGCATTGAAGAGAGTGGG 45835 >seq901 Length=148928 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| ||| Sbjct 142398 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 142457 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 142458 GATGAGACGGACAGAGGTCTGGATCTCTCGGG 142489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916149705524051