Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 114 3e-20 >seq13 Length=660952 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| | || || ||| |||||| |||| Sbjct 443202 AAGACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGTGACACTATCGACAAC 443143 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| ||||| || | ||||||||| Sbjct 443142 GTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTTATCTTC 443083 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || ||| ||| |||||| ||||||| ||||| Sbjct 443082 GCTGGCAAGCAGCTGGAAGATGGCCGCACCTTGAGCGACTACAACATCCAGAAGGAGTCA 443023 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||| | ||||||| Sbjct 443022 ACTCTTCACCTCGTTCTCCGACTTCG 442997 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| ||||||||||| ||||| ||||||| || ||||| ||| || Sbjct 442997 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 443056 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || ||||||||||| || || ||| Sbjct 443057 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGA 443101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181807035850189