Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17]
909 sequences; 42,540,497 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq279 179 5e-39
seq59 105 1e-16
>seq279
Length=355525
Score = 179 bits (198), Expect = 5e-39
Identities = 275/384 (72%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953
||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || ||
Sbjct 82544 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 82602
Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013
|| | |||||||| | || ||||| |||| || ||||| ||||||||| ||
Sbjct 82603 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 82662
Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073
|| ||||| || || || |||||||| ||||| |||||||| ||| ||||||| || |
Sbjct 82663 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGC 82722
Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132
| || | ||| | ||||| |||||| || || | || | | | || ||||| |
Sbjct 82723 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 82781
Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192
||||||| || |||||| | | ||| | || | ||||||| |||| ||||| |
Sbjct 82782 ACTGGGCCATCCGATGGATCCAGGATAAGGAC-TCCTC-CTTTGCCCAGCGTCTCGTTGC 82839
Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251
|||||| || || ||||| ||||| ||| || ||| | ||||||| ||||||||
Sbjct 82840 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 82899
Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| || |||||||| |||||
Sbjct 82900 GAAGCGTGGTCTCATGCCTGGTCT 82923
>seq59
Length=53314
Score = 105 bits (116), Expect = 1e-16
Identities = 178/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||| ||||| ||||||||||| || | || || || || ||||| || | ||
Sbjct 45835 CCCACTCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 45776
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 45775 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 45716
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || |||||| | | ||| | || || | ||| | ||| |
Sbjct 45715 AAGATGGCTGGTGGTATCGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 45656
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || || || |||| || |||||||| || || ||| ||||
Sbjct 45655 GCCGGTACCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 45596
Query 260165 GCGCGCTACGTCGACCAG 260182
|| || || |||||||||
Sbjct 45595 GCTCGGTATGTCGACCAG 45578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177723525279258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |