Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq279 179 5e-39 seq59 105 1e-16 >seq279 Length=355525 Score = 179 bits (198), Expect = 5e-39 Identities = 275/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || || Sbjct 82544 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 82602 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | |||||||| | || ||||| |||| || ||||| ||||||||| || Sbjct 82603 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 82662 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| || || || |||||||| ||||| |||||||| ||| ||||||| || | Sbjct 82663 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGC 82722 Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | || | ||| | ||||| |||||| || || | || | | | || ||||| | Sbjct 82723 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 82781 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||||| || |||||| | | ||| | || | ||||||| |||| ||||| | Sbjct 82782 ACTGGGCCATCCGATGGATCCAGGATAAGGAC-TCCTC-CTTTGCCCAGCGTCTCGTTGC 82839 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 |||||| || || ||||| ||||| ||| || ||| | ||||||| |||||||| Sbjct 82840 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 82899 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| || |||||||| ||||| Sbjct 82900 GAAGCGTGGTCTCATGCCTGGTCT 82923 >seq59 Length=53314 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| ||||||||||| || | || || || || ||||| || | || Sbjct 45835 CCCACTCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 45776 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 45775 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 45716 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || |||||| | | ||| | || || | ||| | ||| | Sbjct 45715 AAGATGGCTGGTGGTATCGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 45656 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || || || |||| || |||||||| || || ||| |||| Sbjct 45655 GCCGGTACCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 45596 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 45595 GCTCGGTATGTCGACCAG 45578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177723525279258