Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq59 156 6e-33 seq279 114 2e-20 >seq59 Length=53314 Score = 156 bits (172), Expect = 6e-33 Identities = 553/854 (65%), Gaps = 20/854 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | || || ||||| ||| ||||| |||||||| || || || Sbjct 45173 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 45232 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| |||| | || | ||| | | ||||| | ||| || || Sbjct 45233 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 45292 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 | |||||| || ||| ||| || || | | | ||| | |||| |||||||| Sbjct 45293 T---GTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCC--TCGAATTCC 45347 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||||| | || | | ||||| || || || || ||||||| || ||| || | Sbjct 45348 TCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCG 45407 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| || ||||| || ||||| || |||||||| || | || ||||| | | Sbjct 45408 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGG 45467 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATCA 69702 | | || || || || || || ||| ||||| || || || | | |||| Sbjct 45468 GCACGGACCTCCTCCTTACC---ATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCA 45524 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 || ||||| || || || || || || | | || ||||| || || || ||||| || Sbjct 45525 GAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCCACCCTGGTCG 45584 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | || | |||||||| || |||| | ||||| |||| || |||||| ||| |||| Sbjct 45585 ACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCG 45644 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || || || | || || || | || |||||| | | |||||| || || Sbjct 45645 TTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCGATACCA 45704 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 || ||||| || ||||| | ||||| || | || || || || ||||| || || Sbjct 45705 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTG 45764 Query 69943 TCATCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 || || |||| | || ||||| || | |||| ||| | || || || ||||| Sbjct 45765 TCGTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATT 45823 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | || || || || || ||||| | || ||| | |||||||||||| || | Sbjct 45824 GAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAA 45883 Query 70062 AGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAG 70120 || || ||||| ||| | || || | | |||||||| | ||| ||||||| Sbjct 45884 GACTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAG 45942 Query 70121 GTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACC 70180 | || || | | ||| | || || | ||||||||| |||| ||| || || | Sbjct 45943 GGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGC 46002 Query 70181 CAAAATAGTTGTAT 70194 |||| || | |||| Sbjct 46003 CAAAGTATTGGTAT 46016 >seq279 Length=355525 Score = 114 bits (126), Expect = 2e-20 Identities = 363/559 (65%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || ||||| || | | || | ||||| || || || || Sbjct 82981 GCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAG 82922 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||||||||| |||||||| || |||| || || | ||| ||||| Sbjct 82921 ACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAA 82862 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TG 39792 ||| || || || || ||||| ||||| || | || | | | || ||| || Sbjct 82861 GATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 82802 Query 39793 TATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | || ||||| ||||| ||||| | || || || || || || || | Sbjct 82801 GATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 82743 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||||| | | | || || | ||||| || || | || || Sbjct 82742 TGAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGG 82683 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| ||||| || ||| ||||| || ||||| || || | || |||| | Sbjct 82682 TCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGA 82623 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| || |||| || | | || || || || || |||||| || | Sbjct 82622 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAG 82563 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCC 40088 | || || || | | || | ||| | | ||||| | || | || |||| Sbjct 82562 CGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCC 82503 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | || ||| || || | ||| | || ||||| ||||| || || ||||| |||| Sbjct 82502 AGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCT 82443 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 82442 TCTTGTACATTTGCCAAAT 82424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900994998760