Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq279 104 7e-17 >seq279 Length=355525 Score = 104 bits (114), Expect = 7e-17 Identities = 349/530 (66%), Gaps = 15/530 (3%) Strand=Plus/Plus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 ||||||||||||||||||||||| | ||| |||||| | || ||| || |||| Sbjct 82469 GAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAG 82528 Query 443409 C-GCGATTTCT-TCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTG 443466 | | ||| | || | |||| | || ||||| || | || ||||||||| | Sbjct 82529 CAGTTCTTTGTCTCTCA--CATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACG 82586 Query 443467 AGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACG 443526 |||| || || ||| ||| | ||| | | | ||||| || | |||||||| Sbjct 82587 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACG 82646 Query 443527 CGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACAC 443586 ||||| | |||||||||||||| ||||| |||| | | ||| | ||| Sbjct 82647 GCTTCCAGATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACA- 82705 Query 443587 TAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGTTCAT---GACCACGCCA 443642 || || || || || ||||| || |||| ||| || ||| ||||| || Sbjct 82706 TACATC--AAGGAGCCCGCCCAGCGAACCTATCTCTTCAACGC-CATTGAGACCATTCCC 82762 Query 443643 GGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC-TT 443701 ||||| | ||| || |||||| | | ||| || | || || ||| | || Sbjct 82763 TGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAG-GATAAGGACTCCTCCTT 82821 Query 443702 CGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAG 443761 | | |||| || || || ||||||| || || || | || || || || || || | Sbjct 82822 TGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGT-GCCTTCG 82880 Query 443762 CCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAAC 443821 |||||||||||||| | || |||||||| || |||| |||||||| || ||||| | Sbjct 82881 CCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGC 82940 Query 443822 TGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | ||| ||| ||||||||| | || ||||| ||||| || ||| || Sbjct 82941 TCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 82990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588317501345505