Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq59 219 5e-52 seq279 113 6e-20 seq168 91.5 2e-13 >seq59 Length=53314 Score = 219 bits (242), Expect = 5e-52 Identities = 1144/1792 (64%), Gaps = 59/1792 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 44181 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 44240 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | | | |||||| | || |||| |||||| || Sbjct 44241 TTGAGGCCAAGCTTCCA-GCCTGCGAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 44299 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | |||||||| || || | || ||| Sbjct 44300 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAATGCACCTCGATCCGCAGCC 44357 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | || ||| || || | || ||||| || || || ||| ||||| Sbjct 44358 ATCTGAACGAC---CTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACG 44414 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 44415 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 44474 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 44475 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 44534 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 44535 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 44594 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 44595 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 44654 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTGAGC 110854 ||||| | || | ||||| ||||| ||| | ||||| || || | | Sbjct 44655 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCC 44711 Query 110855 TTGGT-TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTC 110913 || || || |||| ||||||||||||| || | || | || ||||||||||||| Sbjct 44712 GAGGGCTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTT 44770 Query 110914 AAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 110972 ||||| |||| ||| | | | ||||| | ||| | || |||| |||| Sbjct 44771 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGT 44829 Query 110973 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 111032 |||| ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 44830 GATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-GC 44888 Query 111033 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 111091 | ||| | || || |||| || || ||||||||||| | ||||||||||| ||| Sbjct 44889 ATACGCAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGG 44948 Query 111092 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 ||||| ||| || || || || || || || || || |||| ||| Sbjct 44949 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 45008 Query 111152 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 111211 || || |||||| || ||| | || || || | | || | || || Sbjct 45009 AGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAGCT 45065 Query 111212 TCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 || || | ||| | || || | | || || | ||||| ||||| ||| Sbjct 45066 TCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCG 45125 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 45126 TCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGG 45185 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || ||| Sbjct 45186 TTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTC 45245 Query 111389 TCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGC 111447 || ||||| | | ||||| || | ||||| | || | | || | | || | | | Sbjct 45246 TCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGA 45302 Query 111448 CCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 || | |||||| |||| ||||| ||| || || || || ||||| ||| || ||| Sbjct 45303 CCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTC 45361 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 || ||| || || || || || || | || | ||| | ||| | ||||| || Sbjct 45362 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACG 45421 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCT 111622 |||||||||||| || || ||||| |||| | | ||| ||||| | ||| || |||| Sbjct 45422 CTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTCC 45479 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || | ||| ||||| || | |||||||| || | || ||| | |||||| ||||| Sbjct 45480 TCCTTACCATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCG 45539 Query 111683 AGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCT 111736 || |||| || | || || | | ||| ||| | || | ||||| || || Sbjct 45540 AGGTAGATGGCAAAAGCACC---TGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCA 45596 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCG 111795 ||| ||| || || |||||||| |||| || ||||| ||| ||| || || || || Sbjct 45597 GTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCG 45656 Query 111796 A-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 111854 | || ||| | | || | | | || | | | || ||||| |||||| || Sbjct 45657 ATGTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCT 45714 Query 111855 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 111914 | ||||| ||||| | | ||||| | ||||| || | || ||| ||||| Sbjct 45715 TGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCA 45774 Query 111915 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 111974 | | | | ||||||| |||| || || || || || ||||||||||| || | Sbjct 45775 TATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGG 45834 Query 111975 GTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 | | || || ||| | | |||| |||||| | ||||||||||||||| || Sbjct 45835 GGGAAGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTC 45892 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || ||| || | | || ||||||| ||||| ||| ||| Sbjct 45893 GATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 45944 >seq279 Length=355525 Score = 113 bits (124), Expect = 6e-20 Identities = 330/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 83265 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 83206 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 83205 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 83151 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||| | ||| ||||||||||| |||| |||| Sbjct 83150 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 83091 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || ||| | | |||||| || || || | | ||| Sbjct 83090 CACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 83031 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 83030 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 82974 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || ||||| ||||| |||| Sbjct 82973 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 82914 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | || | | ||| | || |||||||||||||| Sbjct 82913 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 82854 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| ||||| |||| || || | ||| |||||| ||| ||| | | | |||| Sbjct 82853 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 82795 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 82794 CGGATGGCCCAGTCAGCCTTCTT 82772 >seq168 Length=443820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 169822 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 169881 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 169882 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 169941 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 169942 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 169994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024863986400