Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq59 201 1e-46 seq279 159 4e-34 seq135 86.0 8e-12 >seq59 Length=53314 Score = 201 bits (222), Expect = 1e-46 Identities = 1167/1846 (63%), Gaps = 51/1846 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 44188 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 44247 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| | | ||||| || | |||| | || || | |||| Sbjct 44248 CAAGCTTCCAGCCTGCGAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGT 44307 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| ||||| || |||||||| ||||| | || | Sbjct 44308 GGATGTTCAGTGACTGGGACTGATCAATGAATGCACCTCGATCCGCAGCCATCTGAACGA 44367 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | | ||| ||||| |||||| |||| || ||| | || | ||||| | Sbjct 44368 CCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGT 44427 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 || || || ||||| ||| | | | ||| | | ||||||| | | |||| Sbjct 44428 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 44487 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 118164 | ||||| || | || |||| | || |||||||| |||||||| | Sbjct 44488 ACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAG 44547 Query 118165 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 118224 |||| || | | |||||||||| ||||| ||||| |||||||| ||||| |||| Sbjct 44548 CGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCA 44607 Query 118225 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 118284 || |||| || ||| || ||||| || || | ||| || |||||||||| || | Sbjct 44608 GAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGT 44667 Query 118285 TTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG 118342 | | | | | | | || || ||| ||||| || || | | | || | | Sbjct 44668 GTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCCGAGGGCTTGACGTT 44725 Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| ||||||||||||||||| | || || || || |||| || || || || Sbjct 44726 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 44785 Query 118403 GCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 ||||| ||| |||| | ||||| || |||||| |||||||| || || || Sbjct 44786 ACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCTC 44842 Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AA 118518 || || | || | | |||||| || || || | | || || | || Sbjct 44843 GAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAA 44901 Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 || |||| || || ||||| ||||| || ||||| || || || | ||| ||| | Sbjct 44902 GGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGT 44961 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | ||||| || || || || ||| |||||| | | | || || || | | Sbjct 44962 TGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAA 45021 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-ACA 118697 |||||| ||| | || ||||| | | | || | || || |||||| | | Sbjct 45022 CAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAGT 45075 Query 118698 TACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 118752 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 45076 TGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCAC 45135 Query 118753 TGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 |||||| |||||||| ||||| | ||| || || ||||| || | ||||||||| | Sbjct 45136 AGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGT 45195 Query 118813 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 | ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| Sbjct 45196 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGG 45255 Query 118873 ACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCC 118928 || ||||| || | ||| | | || | || | | || | | | || | ||| Sbjct 45256 CCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTG-CCC 45311 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || | |||| ||||| ||| || || || || || || || | || | ||| || Sbjct 45312 TCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCA 45371 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || | ||||| | || | ||| | ||| || ||||| ||||||||||| Sbjct 45372 GGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAA 45431 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 45432 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGG 45491 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 45492 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 45551 Query 119169 ATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | | ||| | || ||| |||||| ||||||| |||||| ||| || Sbjct 45552 AAAG-CACCT--GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 45608 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 119280 ||||||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 45609 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC- 45667 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | || | | | ||| | | | ||| ||||| || ||| ||| ||||| | Sbjct 45668 -AGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGG 45726 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | || | ||||| | ||||||| || || || ||| |||| | | | | || Sbjct 45727 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA 45786 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 |||| |||| ||| ||| || || || || ||||||||||| || | || || Sbjct 45787 AGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCG 45846 Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCC 119517 ||| | | |||| |||||| | ||| ||||||||||| || | || || || | Sbjct 45847 TGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG-ATATCATCAC 45903 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577 | ||||| | || || ||||| | ||||| || || || || | |||| | Sbjct 45904 CCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGT 45963 Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | | | ||||||| |||||| ||||||| ||||| || Sbjct 45964 CAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 46009 >seq279 Length=355525 Score = 159 bits (176), Expect = 4e-34 Identities = 311/454 (69%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 83265 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 83206 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 83205 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 83147 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||| | ||| || |||||||| |||| |||| ||| Sbjct 83146 ATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 83087 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || ||| ||| ||||||| || || || | ||| | || Sbjct 83086 GGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTG 83027 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 83026 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 82970 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 82969 AGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 82910 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 82909 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 82850 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 | || || |||| |||||||| ||||||||| Sbjct 82849 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 82816 >seq135 Length=460123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 242309 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 242368 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || |||||| |||| || ||| | | || | |||||||||||| Sbjct 242369 GGAACCCGCCAACAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 242428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428173030040