Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq279 154 2e-32 seq2 107 2e-18 >seq279 Length=355525 Score = 154 bits (170), Expect = 2e-32 Identities = 354/522 (68%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||||||||| ||| | |||||||| |||||| | |||| ||||| | | ||| | Sbjct 82460 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACT 82519 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | |||| || || | ||||||| || ||||| |||| || ||||| || Sbjct 82520 GCTGATGAGCAGTTCTTTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATC 82579 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| || | || || ||||| || |||| |||| || | | Sbjct 82580 GTCAACGAGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCC-CTGAGGCTCGTTG 82638 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | ||| ||||| ||| |||| Sbjct 82639 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCA 82697 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734 | |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 82698 TCGACACATACATCAAGGAGCCCGCCCAGC-GAACCTATCTCTTCAACGCCATTGAGACC 82756 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 94793 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 82757 ATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 82816 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||| |||| ||| | || ||||| ||||||||||||||||||| |||| | Sbjct 82817 T-CCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGC 82875 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||| | | || | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 82876 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAA 82935 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| ||||||||||||||||| || ||| || ||||| Sbjct 82936 CGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 82977 >seq2 Length=677019 Score = 107 bits (118), Expect = 2e-18 Identities = 228/332 (69%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGG---TTGATTTTCGCGAGCGA 9752 ||| | |||||||| || || ||||| || ||| || || ||| |||| || || | Sbjct 331049 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCC-GC-A 331106 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | ||||| || || || |||||||| || ||||||||||| ||||| |||| | | Sbjct 331107 GTG--AAGAGGTCACGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 331163 Query 9813 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 331164 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 331223 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 9931 |||||||| ||||| || ||| | |||||| |||| || | || || ||| Sbjct 331224 GTCTTACCAGTACCAGGAGGACCGACTAGGAGGACACCCTTAGGCAGTTTAGCACCAAGA 331283 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCG 9991 | | | | || || | ||| ||||| || |||| ||||| | || |||||||| Sbjct 331284 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 331343 Query 9992 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 10023 ||||| || | ||||||| | ||||| || Sbjct 331344 TCGTCACAACCATGAACATCGTTGAACCGAGT 331375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254172699160