Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq623 163 9e-35 seq13 154 4e-32 seq778 116 1e-20 seq224 96.9 1e-14 >seq623 Length=206012 Score = 163 bits (180), Expect = 9e-35 Identities = 441/668 (66%), Gaps = 9/668 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 87406 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 87465 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 87466 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCTCAGAACACT 87525 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || |||||| | || ||| | | || | || | | | || | | Sbjct 87526 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 87583 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 || | || ||||| || || | | || | | ||| |||| || || || || |||| Sbjct 87584 ATATGAAGCATTTCCCCTTCAAGATCGT-CGACAAG--GGTGGCAAGCCCATCATCGAGG 87640 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || || || ||||| || || || | ||| | | Sbjct 87641 TCGAGTTCAAGGGCGAGACCAAGACC-TTCAGCCCCGAGGAGATCTCTGCTATGATCCTC 87699 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| | || | || || || || | | |||||| || Sbjct 87700 ACCAAGATGCGCGAGACCGCTGAGTCTTACCTTGGCGAGACTGTCAACAACGCTGTTGTT 87759 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||| | |||||| || || || |||||||| ||| Sbjct 87760 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 87819 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| |||| || || || || |||||||| || ||||| || || Sbjct 87820 GCCGGTCTTAACGTTCTTCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 87879 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 |||||||| | | || || || | || || || ||| | ||||||||||| Sbjct 87880 CTTGATAAGAAGGTCGAGGGCGAGCGTAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 87939 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || || ||| Sbjct 87940 TTCGATGTGTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 87999 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || ||||| || || || ||||| || Sbjct 88000 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAACGAG 88059 Query 349919 TTTAAGCG 349926 || ||||| Sbjct 88060 TTCAAGCG 88067 >seq13 Length=660952 Score = 154 bits (170), Expect = 4e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || || || || || || || Sbjct 443215 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 443274 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 443275 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGG 443334 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 443335 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 443393 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 443394 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 443445 Score = 154 bits (170), Expect = 4e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||||||||| || |||||||| || | Sbjct 443439 TTTGCATACCGCCACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGT 443498 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||||||||| |||||||||||||| || || ||||| | Sbjct 443499 AGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 443558 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || ||||| || || | ||| || | Sbjct 443559 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATAGTATCGGACG 443618 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| ||||| || | ||||| || || || || || || Sbjct 443619 ACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 443661 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || | Sbjct 443721 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 443780 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 443781 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 443840 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || ||||| | || || | Sbjct 443841 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAG 443900 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| ||||| | || || || || |||||||| Sbjct 443901 ACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 443955 Score = 134 bits (148), Expect = 4e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || |||||||| ||||| || || || || || || || || || |||||| Sbjct 443006 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCT 443065 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||| |||||||| |||||||| || || || ||| Sbjct 443066 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCC 443125 Query 140646 TGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 ||||| || ||| || || || || || | ||| | ||| || ||||| || | || Sbjct 443126 TGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGT 443184 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || || || || ||||||||||| Sbjct 443185 CTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 443217 >seq778 Length=709472 Score = 116 bits (128), Expect = 1e-20 Identities = 192/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || ||||| Sbjct 661400 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGC 661341 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| ||||| | ||||| || Sbjct 661340 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGCTGGGAGTGAG 661281 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 661280 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 661221 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || ||| | ||||| || || || || ||| | || Sbjct 661220 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 661161 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 661160 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 661128 Score = 104 bits (114), Expect = 7e-17 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| | ||||||||| || || | ||||| || || ||||| || || Sbjct 662161 CGTGGCACACCGAGGGTAACATTC---TTGGACGACACACCGGCGAAATGGAAGGTGTTC 662105 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 662104 AGTGTCATCTGGGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 662045 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 662044 CCAGGGTTGACAA 662032 >seq224 Length=426345 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || || || ||||| || || || || || || Sbjct 275037 CATACCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 275096 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 275097 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 275156 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 275157 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 275216 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 275217 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 275267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515236752494927