Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17]
909 sequences; 42,540,497 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq59 219 5e-52
seq279 116 4e-21
seq135 107 2e-18
>seq59
Length=53314
Score = 219 bits (242), Expect = 5e-52
Identities = 524/779 (67%), Gaps = 30/779 (4%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | |||||| ||||| || | ||| |||
Sbjct 45943 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 45884
Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296
||||| ||| | | ||| ||| |||| ||| ||||| || | || || ||
Sbjct 45883 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACTCTC 45827
Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356
||||| || || || ||| || || |||| |||||| |||| | ||||||||
Sbjct 45826 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 45767
Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416
||| || || || |||||||| || |||||| |||||| ||||||||| | |
Sbjct 45766 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 45707
Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474
|||||||||||| | | ||| | | | | ||||| | ||| || ||| || |
Sbjct 45706 GGTGGTATCGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 45649
Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
| ||||| | ||| |||| | || |||||||| || |||||||||||||| || ||
Sbjct 45648 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 45591
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591
||| ||| |||||||||| ||||| | ||| | | || ||||||||||||||||| |
Sbjct 45590 GTATGTCGACCAGGGTGGCAACAAGCGACCAGGTG-CTTTTGCCATCTACCTCGAGCCTT 45532
Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651
||||| | || | | || || || || || ||| ||| || ||| | || ||| | |
Sbjct 45531 GGCACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCC 45472
Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
| |||||| || || || || ||||| || || || |||||| | || || |
Sbjct 45471 GTGCCCGTGATCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAA 45412
Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTAC 53770
|| ||| || ||| ||||||||||| ||||||||||| |||||| | | || |||
Sbjct 45411 AGAACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTAT 45353
Query 53771 GGTGAGGAGTTTAACGAGATGTATCGGACGT-----ACGCAGTTC-AGGGCCGCTACAAG 53824
|| ||||| || | | |||| | || | | || | |||| |||
Sbjct 45352 GGAGAGGAATTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGC------ 45299
Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884
|||| ||||||| | || | ||| | || || || || |||| ||||| |||
Sbjct 45298 AAGACAATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 45239
Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| || | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 45238 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 45180
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| ||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | ||
Sbjct 44354 TGCGGATCGAGGTGCATTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 44295
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 44294 CACGATGGGCAAGATCACCAGTATGCACTTCGCAGGCTGGAAGCTTGGCCTCAAGACCGG 44235
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 44234 CATGTACTACCTTCGTAC 44217
>seq279
Length=355525
Score = 116 bits (128), Expect = 4e-21
Identities = 316/474 (67%), Gaps = 20/474 (4%)
Strand=Plus/Minus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| |||||||| || ||||||||||| | ||| ||||||| ||||| ||||||||||
Sbjct 82923 AGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAG 82864
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924
||||| || || ||| |||||||| || || || || || || | | || | |
Sbjct 82863 AAGATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCC 82804
Query 74925 ---ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATC 74978
||||| || || ||||| ||||| ||| || | |||||| | || || ||
Sbjct 82803 TGGATCCA--TCGGATGGCCCAGTCAGC-CTTCTTTCGGATGCAGGGAATGGTCTCAATG 82747
Query 74979 GCTTGGAAGAGGCTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTG 75036
|| | |||||| | ||| || |||| ||||||| | |||| || | || |
Sbjct 82746 GCGTTGAAGAG--ATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGG 82689
Query 75037 AGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCT 75096
|||| ||||| |||||||| ||| | | |||| | ||||||| | || ||||
Sbjct 82688 AGTAGGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCT 82629
Query 75097 CTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTC 75154
| | ||||| || | || |||| || | ||| ||||| ||||||| || ||
Sbjct 82628 CAGGGATCTGGACCTCGCCACTGAATCGCTC--GACGAGGTTCTCGTTGACGATACCATC 82571
Query 75155 CGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAG 75211
||||| ||||| ||||| || | || |||| ||||||| |||| | |
Sbjct 82570 AGAGGCAGCGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCG 82511
Query 75212 TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
|||| ||| || | || ||| | | |||||||||||| | ||||||||
Sbjct 82510 GTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 82457
>seq135
Length=460123
Score = 107 bits (118), Expect = 2e-18
Identities = 270/405 (67%), Gaps = 8/405 (2%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | |
Sbjct 240243 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 240302
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992
||||| | | | ||||| || || | | | || | || | | ||| ||
Sbjct 240303 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 240358
Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051
|| | ||| ||| || | | ||| || ||| |||||| |||| || | |||||
Sbjct 240359 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 240418
Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111
||||| ||||| || || || | || || | |||| ||| || || |||||
Sbjct 240419 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 240478
Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171
|||||| | ||| ||||| ||||| |||| | || || || ||| | |||
Sbjct 240479 GTTGTTTGAGCCGACGAAGTTCTGGGCCAGGCCGATGATAGTCTGTTGAAGAGACTGTTC 240538
Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231
||||||||| || || |||||||| | || || || ||||| | | |||||| ||||
Sbjct 240539 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 240598
Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276
| | ||| |||||| |||||| || || ||||| |||||
Sbjct 240599 TTTGACGATGTTTCTCTTGAAACAGGCATATATGACCTTACGCTG 240643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209782258200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |