Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59 219 5e-52 seq279 116 4e-21 seq135 107 2e-18 >seq59 Length=53314 Score = 219 bits (242), Expect = 5e-52 Identities = 524/779 (67%), Gaps = 30/779 (4%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 45943 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 45884 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 ||||| ||| | | ||| ||| |||| ||| ||||| || | || || || Sbjct 45883 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACTCTC 45827 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || || || ||| || || |||| |||||| |||| | |||||||| Sbjct 45826 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 45767 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || |||||||| || |||||| |||||| ||||||||| | | Sbjct 45766 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 45707 Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 |||||||||||| | | ||| | | | | ||||| | ||| || ||| || | Sbjct 45706 GGTGGTATCGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 45649 Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 | ||||| | ||| |||| | || |||||||| || |||||||||||||| || || Sbjct 45648 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 45591 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 ||| ||| |||||||||| ||||| | ||| | | || ||||||||||||||||| | Sbjct 45590 GTATGTCGACCAGGGTGGCAACAAGCGACCAGGTG-CTTTTGCCATCTACCTCGAGCCTT 45532 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| | || | | || || || || || ||| ||| || ||| | || ||| | | Sbjct 45531 GGCACTCTGATGTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCC 45472 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 | |||||| || || || || ||||| || || || |||||| | || || | Sbjct 45471 GTGCCCGTGATCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAA 45412 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTAC 53770 || ||| || ||| ||||||||||| ||||||||||| |||||| | | || ||| Sbjct 45411 AGAACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTAT 45353 Query 53771 GGTGAGGAGTTTAACGAGATGTATCGGACGT-----ACGCAGTTC-AGGGCCGCTACAAG 53824 || ||||| || | | |||| | || | | || | |||| ||| Sbjct 45352 GGAGAGGAATTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGC------ 45299 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 |||| ||||||| | || | ||| | || || || || |||| ||||| ||| Sbjct 45298 AAGACAATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 45239 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | || | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 45238 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 45180 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| ||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | || Sbjct 44354 TGCGGATCGAGGTGCATTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 44295 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 44294 CACGATGGGCAAGATCACCAGTATGCACTTCGCAGGCTGGAAGCTTGGCCTCAAGACCGG 44235 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 44234 CATGTACTACCTTCGTAC 44217 >seq279 Length=355525 Score = 116 bits (128), Expect = 4e-21 Identities = 316/474 (67%), Gaps = 20/474 (4%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || ||||||||||| | ||| ||||||| ||||| |||||||||| Sbjct 82923 AGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAG 82864 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| || || ||| |||||||| || || || || || || | | || | | Sbjct 82863 AAGATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCC 82804 Query 74925 ---ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATC 74978 ||||| || || ||||| ||||| ||| || | |||||| | || || || Sbjct 82803 TGGATCCA--TCGGATGGCCCAGTCAGC-CTTCTTTCGGATGCAGGGAATGGTCTCAATG 82747 Query 74979 GCTTGGAAGAGGCTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTG 75036 || | |||||| | ||| || |||| ||||||| | |||| || | || | Sbjct 82746 GCGTTGAAGAG--ATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGG 82689 Query 75037 AGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCT 75096 |||| ||||| |||||||| ||| | | |||| | ||||||| | || |||| Sbjct 82688 AGTAGGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCT 82629 Query 75097 CTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTC 75154 | | ||||| || | || |||| || | ||| ||||| ||||||| || || Sbjct 82628 CAGGGATCTGGACCTCGCCACTGAATCGCTC--GACGAGGTTCTCGTTGACGATACCATC 82571 Query 75155 CGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAG 75211 ||||| ||||| ||||| || | || |||| ||||||| |||| | | Sbjct 82570 AGAGGCAGCGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCG 82511 Query 75212 TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| ||| || | || ||| | | |||||||||||| | |||||||| Sbjct 82510 GTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 82457 >seq135 Length=460123 Score = 107 bits (118), Expect = 2e-18 Identities = 270/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | | Sbjct 240243 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 240302 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992 ||||| | | | ||||| || || | | | || | || | | ||| || Sbjct 240303 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 240358 Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 || | ||| ||| || | | ||| || ||| |||||| |||| || | ||||| Sbjct 240359 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 240418 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 240419 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 240478 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| | ||| ||||| ||||| |||| | || || || ||| | ||| Sbjct 240479 GTTGTTTGAGCCGACGAAGTTCTGGGCCAGGCCGATGATAGTCTGTTGAAGAGACTGTTC 240538 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||||||| | || || || ||||| | | |||||| |||| Sbjct 240539 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 240598 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | | ||| |||||| |||||| || || ||||| ||||| Sbjct 240599 TTTGACGATGTTTCTCTTGAAACAGGCATATATGACCTTACGCTG 240643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209782258200