Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 8e-15 >seq13 Length=660952 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| |||||| |||||| |||||||| ||||| || || || || |||| ||||| || Sbjct 443752 ATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTG 443811 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || || || ||||| || || | ||||||||||| ||| | Sbjct 443812 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCT 443870 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | ||| ||||| ||| || || | ||| || || || |||| Sbjct 443871 TGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGG 443930 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || || ||||||||| || Sbjct 443931 TCAAGGTCTTGACGAAGATCTGCATGATG 443959 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| ||||| || ||||| || || ||| Sbjct 443219 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 443278 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || |||||||| || || || || || | |||||||| ||||| || Sbjct 443279 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 443338 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 443339 ATACCCTCCTTGTCCTGGATCTT 443361 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | || | ||| ||||| |||||||||||||| || || | | Sbjct 443447 CCGCCACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCA 443506 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||||||||| || || ||||| || | ||||| ||||| || || Sbjct 443507 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 443566 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 443567 ATGCCCTCCTTGTC 443580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726113287797